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BaseInfo

ncRNA ID	novel_bna_miR542
Species	Brassica napus
Class	miRNA
Genome position	ChrA7:10121543-10121638 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537603
Length	21
Mature sequence(if miRNA)	1 - GGGCAAGAUCUCUAUUGGCAG - 21
Stem-loop(if miRNA)	--     A       A          AC   U  -UU   CUU     CU   GGGCA GAUCUCU UUGGCAGGAA  CAU AC   GAA   UGCAU  C   ||||| ||||||| ||||||||||  ||| ||   |||   |||||   CCCGU UUAGAGG AACCGUCUUU  GUG UG   CUU   ACGUA  U GG     -       A          GA   C  UUU   --U     UU
Stem-loop sequence	GGGCAAGAUCUCUAUUGGCAGGAAACCAUUACUUGAACUUUGCAUCUCUUUAUGCAUUUCUUUGUCGUGAGUUUCUGCCAAAGGAGAUUUGCCCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013797591.1	ncRNA:21   GACGGUUAUCUCUAGAACGGG   1   =||||||*||||||||||||= targets:1900   UUGCCAACAGAGAUCUUGCCU   1920 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106357875 (LOC106357875), transcript variant X2, mRNA	uncharacterized LOC106357875(LOC106357875)	coding protein	psRNATarget
XM_013797590.1	ncRNA:21   GACGGUUAUCUCUAGAACGGG   1   =||||||*||||||||||||= targets:1938   UUGCCAACAGAGAUCUUGCCU   1958 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106357875 (LOC106357875), transcript variant X1, mRNA	uncharacterized LOC106357875(LOC106357875)	coding protein	psRNATarget
XM_013829613.1	ncRNA:21   GACGGUUAUCUCUAGAACGGG   1   *||||=*|||||||||||||= targets:1079   GUGCCGCUAGAGAUCUUGCCU   1099 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106389382 (LOC106389382), transcript variant X1, mRNA	uncharacterized LOC106389382(LOC106389382)	coding protein	psRNATarget
XM_013829614.1	ncRNA:21   GACGGUUAUCUCUAGAACGGG   1   *||||=*|||||||||||||= targets:1169   GUGCCGCUAGAGAUCUUGCCU   1189 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106389382 (LOC106389382), transcript variant X2, mRNA	uncharacterized LOC106389382(LOC106389382)	coding protein	psRNATarget