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BaseInfo

ncRNA ID	novel_bna_miR539
Species	Brassica napus
Class	miRNA
Genome position	ChrA5:5068995-5069075 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537603;SRR537609;SRR538067
Length	23
Mature sequence(if miRNA)	1 - UGCCUGGCUCCCUGUAUGCCAUC - 23
Stem-loop(if miRNA)	--   C       CU         C U UA  C          UGC UGGCUCC  GUAUGCCAU C C  AG UCAUCGAC   ||| |||||||  ||||||||| | |  || |||||||C   ACG ACCGAGG  UAUGCGGUA G G  UC AGUAGUUA AU   U       AG         A U CC  C
Stem-loop sequence	UGCCUGGCUCCCUGUAUGCCAUCCUCUAAGCUCAUCGACCAUUGAUGACCUCCGUGAAUGGCGUAUGAGGAGCCAUGCAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013793213.1	ncRNA:23   CUACCGUAUGUCCCUCGGUCCGU   1   |*||||||=|||||||||||||| targets:1311   GCUGGCAUGCAGGGAGCCAGGCA   1333 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106353451), mRNA	auxin response factor 17-like(LOC106353451)	coding protein	psRNATarget
XM_013809033.1	ncRNA:23   CUACCGUAUGUCCCUCGGUCCGU   1   |*||||||=|||||||||||||| targets:1322   GCUGGCAUGCAGGGAGCCAGGCA   1344 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106368952), mRNA	auxin response factor 17-like(LOC106368952)	coding protein	psRNATarget
XM_013878072.1	ncRNA:23   CUACCGUAUGUCCCUCGGUCCGU   1   |*||||||=|||||||||||||| targets:1360   GCUGGCAUGCAGGGAGCCAGGCA   1382 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 18-like (LOC106437151), mRNA	auxin response factor 18-like(LOC106437151)	coding protein	psRNATarget
XM_013840650.1	ncRNA:23   CUACCGUAUGUCCCUCGGUCCGU   1   |**|||||=|||||||||||||| targets:317   GCCGGCAUGCAGGGAGCCAGGCA   339 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106400269), transcript variant X1, mRNA	auxin response factor 17-like(LOC106400269)	coding protein	psRNATarget
XM_013840662.1	ncRNA:23   CUACCGUAUGUCCCUCGGUCCGU   1   |**|||||=|||||||||||||| targets:1365   GCCGGCAUGCAGGGAGCCAGGCA   1387 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106400284), mRNA	auxin response factor 17-like(LOC106400284)	coding protein	psRNATarget
XM_013794565.1	ncRNA:23   CUACCGUAUGUCCCUCGGUCCGU   1   |**|||||*|||||||||||||| targets:1379   GCCGGCAUCCAGGGAGCCAGGCA   1401 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106354590), mRNA	auxin response factor 17-like(LOC106354590)	coding protein	psRNATarget
XM_013836968.1	ncRNA:23   CUACCGUAUGUCCCUCGGUCCGU   1   |**||*||||||||||||||||| targets:1527   GCAGGAAUACAGGGAGCCAGGCA   1549 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 10 (LOC106396551), mRNA	auxin response factor 10(LOC106396551)	coding protein	psRNATarget
XM_013830883.1	ncRNA:23   CUACCGUAUGUCCCUCGGUCCGU   1   |**||=*|||||||||||||||| targets:222   GUGGGUUUACAGGGAGCCAGGCA   244 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16-like (LOC106390396), mRNA	auxin response factor 16-like(LOC106390396)	coding protein	psRNATarget
XM_013884453.1	ncRNA:23   CUACCGUAUGUCCCUCGGUCCGU   1   |**||=*|||||||||||||||| targets:1504   GUGGGUUUACAGGGAGCCAGGCA   1526 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16-like (LOC106442809), mRNA	auxin response factor 16-like(LOC106442809)	coding protein	psRNATarget
XM_013830782.1	ncRNA:23   CUACCGUAUGUCCCUCGGUCCGU   1   |**||=*|||||||||||||||| targets:1488   GUGGGUUUACAGGGAGCCAGGCA   1510 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16-like (LOC106390311), mRNA	auxin response factor 16-like(LOC106390311)	coding protein	psRNATarget
XM_013892562.1	ncRNA:23   CUACCGUAUGUCCCUCGGUCCGU   1   |**||=*|||||||||||||||| targets:1522   GUGGGUUUACAGGGAGCCAGGCA   1544 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16-like (LOC106450799), mRNA	auxin response factor 16-like(LOC106450799)	coding protein	psRNATarget
XM_013852053.1	ncRNA:23   CUACCGUAUGUCCCUCGGUCCGU   1   |**||=*|||||||||||||||| targets:1495   GUGGGUUUACAGGGAGCCAGGCA   1517 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16 (LOC106411312), mRNA	auxin response factor 16(LOC106411312)	coding protein	psRNATarget