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BaseInfo

ncRNA ID novel_bna_miR533
Species Brassica napus
Class miRNA
Genome position ChrA3:43305035-43305123 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537603;SRR538151
Length 20
Mature sequence(if miRNA) 1 - UGCACUGCCUCUUCCCUGGC - 20
Stem-loop(if miRNA) --       CAA    A      ----A     UUUUUACCAAAAC
  CAGGGAA   GCAG GCAUGG     UUGAG             A
  |||||||   |||| ||||||     |||||             U
  GUCCCUU   CGUC CGUACC     CUGGU             C
CG       CUC    A      CUUCU     UUGUAUCAGUAAA
Stem-loop sequence CAGGGAACAAGCAGAGCAUGGAUUGAGUUUUUACCAAAACAUCAAAUGACUAUGUUUGGUCUCUUCCCAUGCACUGCCUCUUCCCUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013892113.1
ncRNA:20   CGGUCCCUUCUCCGUCACGU   1
  ||||||||||||||||||||
targets:1422   GCCAGGGAAGAGGCAGUGCA   1441

0.0 PREDICTED: Brassica napus peptide chain release factor 1-like (LOC106450454), mRNA peptide chain release factor 1-like(LOC106450454) coding protein psRNATarget
XM_013831159.1
ncRNA:20   CGGUCCCUUCUCCGUCACGU   1
  ||||||||||||||||||||
targets:1445   GCCAGGGAAGAGGCAGUGCA   1464

0.0 PREDICTED: Brassica napus peptide chain release factor 1-like (LOC106390649), mRNA peptide chain release factor 1-like(LOC106390649) coding protein psRNATarget
XM_013879279.1
ncRNA:20   CGGU-CCCUUCUCCGUCACGU   1
  ||||-||||||||||||||||
targets:84   GCCAAGGGAAGAGGCAGUGCA   104

2.0 PREDICTED: Brassica napus basic blue protein (LOC106438191), mRNA basic blue protein(LOC106438191) coding protein psRNATarget
XM_013866522.1
ncRNA:20   CGGUCCCUUCUCCGUCACGU   1
  ***|||||||||||||||||
targets:680   CGAAGGGAAGAGGCAGUGCA   699

2.0 PREDICTED: Brassica napus L-ascorbate oxidase-like (LOC106425805), mRNA L-ascorbate oxidase-like(LOC106425805) coding protein psRNATarget
XM_013819254.1
ncRNA:20   CGGUCCCUUCUCCGUCACGU   1
  |||||*||||||||*|||||
targets:272   GCCAGUGAAGAGGCUGUGCA   291

2.5 PREDICTED: Brassica napus laccase-12-like (LOC106379249), mRNA laccase-12-like(LOC106379249) coding protein psRNATarget
XM_013863572.1
ncRNA:20   CGGUCCCUUCUCCGUCACGU   1
  |||||*||||||||*|||||
targets:169   GCCAGUGAAGAGGCUGUGCA   188

2.5 PREDICTED: Brassica napus laccase-12 (LOC106422776), mRNA laccase-12(LOC106422776) coding protein psRNATarget
XM_013886024.1
ncRNA:20   CGGUCCCUUCUCCGUCACGU   1
  *||||*||||||||*|||||
targets:160   ACCAGUGAAGAGGCUGUGCA   179

2.5 PREDICTED: Brassica napus laccase-12-like (LOC106444570), mRNA laccase-12-like(LOC106444570) coding protein psRNATarget
XM_013791739.1
ncRNA:20   CGGUCCCUUCUCCGUCACGU   1
  *||||*||||||||*|||||
targets:141   ACCAGUGAAGAGGCUGUGCA   160

2.5 PREDICTED: Brassica napus laccase-3 (LOC106352049), mRNA laccase-3(LOC106352049) coding protein psRNATarget
XM_013859979.1
ncRNA:20   CGGUCCCUUCUCCGUCACGU   1
  *||||*||||||||*|||||
targets:178   ACCAGUGAAGAGGCUGUGCA   197

2.5 PREDICTED: Brassica napus laccase-12-like (LOC106419221), mRNA laccase-12-like(LOC106419221) coding protein psRNATarget
XM_013850151.1
ncRNA:20   CGGUCCCUUCUCCGUCACGU   1
  *||||*||||||||*|||||
targets:203   ACCAGUGAAGAGGCUGUGCA   222

2.5 PREDICTED: Brassica napus laccase-3-like (LOC106409532), transcript variant X1, mRNA laccase-3-like(LOC106409532) coding protein psRNATarget
XM_013850152.1
ncRNA:20   CGGUCCCUUCUCCGUCACGU   1
  *||||*||||||||*|||||
targets:203   ACCAGUGAAGAGGCUGUGCA   222

2.5 PREDICTED: Brassica napus laccase-3-like (LOC106409532), transcript variant X2, mRNA laccase-3-like(LOC106409532) coding protein psRNATarget
XM_013870978.1
ncRNA:20   CGGUCC-CUUCUCCGUCACGU   1
  *||||*-||||||||||||||
targets:939   ACCAGCUGAAGAGGCAGUGCA   959

3.0 PREDICTED: Brassica napus uncharacterized LOC106430206 (LOC106430206), mRNA uncharacterized LOC106430206(LOC106430206) coding protein psRNATarget
XM_013824802.1
ncRNA:20   CGGUCC-CUUCUCCGUCACGU   1
  *||||*-||||||||||||||
targets:933   ACCAGCUGAAGAGGCAGUGCA   953

3.0 PREDICTED: Brassica napus centromere protein O-like (LOC106384885), mRNA centromere protein O-like(LOC106384885) coding protein psRNATarget
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