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BaseInfo

ncRNA ID	novel_bna_miR531
Species	Brassica napus
Class	miRNA
Genome position	ChrC1:29738172-29738373 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363495;SRR1363496
Length	24
Mature sequence(if miRNA)	179 - AUUCUAUUAUAGAGUUGGAUUUGC - 202
Stem-loop(if miRNA)	--                                                                            A  C           C      U   AUUCUAUUAUAGAGUUGGAUUUGCUCCAAUGGUUCACUCUAUAAUAGAGUUACUCUAUAAUAGAGUGAAAUAUAGA UA UCUUAUUUUUU ACUCUA A   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||   UGAGAUAAUAUCUCAACUUAAACGAGGUUAUCAAGUGAGAUAUUAUCUCAAUGAGAUAUUAUCUCACUUUAUAUCU AU AGAAUAAAAAA UGAGGU U AU                                                                            G  U           A      U
Stem-loop sequence	AUUCUAUUAUAGAGUUGGAUUUGCUCCAAUGGUUCACUCUAUAAUAGAGUUACUCUAUAAUAGAGUGAAAUAUAGAAUACUCUUAUUUUUUCACUCUAUAUUUGGAGUAAAAAAAUAAGAUUAGUCUAUAUUUCACUCUAUUAUAGAGUAACUCUAUUAUAGAGUGAACUAUUGGAGCAAAUUCAACUCUAUAAUAGAGUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013785684.1	ncRNA:24   CGUUUAGGUUGAGAUAU-UAUCUUA   1   *|*||||||||||||||-||||||| targets:2820   UCCAAUCCAACUCUAUAUAUAGAAU   2844 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106346374 (LOC106346374), transcript variant X5, mRNA	uncharacterized LOC106346374(LOC106346374)	coding protein	psRNATarget
XM_013785681.1	ncRNA:24   CGUUUAGGUUGAGAUAU-UAUCUUA   1   *|*||||||||||||||-||||||| targets:3442   UCCAAUCCAACUCUAUAUAUAGAAU   3466 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106346374 (LOC106346374), transcript variant X2, mRNA	uncharacterized LOC106346374(LOC106346374)	coding protein	psRNATarget
XM_013785680.1	ncRNA:24   CGUUUAGGUUGAGAUAU-UAUCUUA   1   *|*||||||||||||||-||||||| targets:3474   UCCAAUCCAACUCUAUAUAUAGAAU   3498 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106346374 (LOC106346374), transcript variant X1, mRNA	uncharacterized LOC106346374(LOC106346374)	coding protein	psRNATarget
XM_013785683.1	ncRNA:24   CGUUUAGGUUGAGAUAU-UAUCUUA   1   *|*||||||||||||||-||||||| targets:3693   UCCAAUCCAACUCUAUAUAUAGAAU   3717 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106346374 (LOC106346374), transcript variant X4, mRNA	uncharacterized LOC106346374(LOC106346374)	coding protein	psRNATarget