Search result

BaseInfo

ncRNA ID	novel_bna_miR517
Species	Brassica napus
Class	miRNA
Genome position	ChrA9:44822990-44823069 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363495;SRR1363496
Length	21
Mature sequence(if miRNA)	1 - UUAAGGUGAGAUUCUUAGCGG - 21
Stem-loop(if miRNA)	--  CG AG  G     C   ACGCC       AAU   CAC   GC  A  AU UCACC UAA     GACUUCG   GCC   A   ||  |  || ||||| |||     |||||||   |||   CG  U  UA AGUGG AUU     UUGAAGC   CGG   A GG  AU CU  G     A   ----C       CGC   UCC
Stem-loop sequence	GCCGAAGAUGUCACCCUAAACGCCGACUUCGAAUGCCCACAACCUGGCCGCCGAAGUUCUUAAGGUGAGAUUCUUAGCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013824931.1	ncRNA:21   GGCGAUUCUUAGAGUGGAAUU   1   |||||||||||||||||||=| targets:48   CCGCUAAGAAUCUCACCUUGA   68 Target Full Sequence	1.5	PREDICTED: Brassica napus SNAP25 homologous protein SNAP33-like (LOC106384998), mRNA	SNAP25 homologous protein SNAP33-like(LOC106384998)	coding protein	psRNATarget
XM_013841154.1	ncRNA:21   GGCGAUUCUUAGAGUGGAAUU   1   ***|||||||*|||||||||| targets:567   GACCUAAGAACCUCACCUUAA   587 Target Full Sequence	2.5	PREDICTED: Brassica napus disease resistance protein RPS5-like (LOC106400767), transcript variant X2, mRNA	disease resistance protein RPS5-like(LOC106400767)	coding protein	psRNATarget
XM_013841153.1	ncRNA:21   GGCGAUUCUUAGAGUGGAAUU   1   ***|||||||*|||||||||| targets:681   GACCUAAGAACCUCACCUUAA   701 Target Full Sequence	2.5	PREDICTED: Brassica napus disease resistance protein RPS5-like (LOC106400767), transcript variant X1, mRNA	disease resistance protein RPS5-like(LOC106400767)	coding protein	psRNATarget