Search result

BaseInfo

ncRNA ID	novel_bna_miR515
Species	Brassica napus
Class	miRNA
Genome position	ChrC6:1252291-1252493 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537602;SRR537605;SRR537606;SRR537633;SRR537857;SRR538066;SRR538151;SRR538225;SRR538253
Length	24
Mature sequence(if miRNA)	180 - AAGAACUCCGGGUUAAUCAUGAUC - 203
Stem-loop(if miRNA)	--G                            A                            C        -         AA                   UA    CAUGAUUAACCCGGGGUUCUUAGGGUGG GUUCUUAGCGGAAGUUAAGAAGCUGUUU UUAACUUU AACUAAAAA  CUAAGAACCGGUUCUUAAA  A    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||  |||||||||||||||||||  G    GUACUAAUUGGGCCUCAAGAAUCUCACC CAAGAAUCGCCUUCAAUUCUUUGACAAA AAUUGAAA UUGAUUUUU  GAUUCUUGGCCAAGAAUUU  G CUA                            A                            A        A         -C                   CA
Stem-loop sequence	GCAUGAUUAACCCGGGGUUCUUAGGGUGGAGUUCUUAGCGGAAGUUAAGAAGCUGUUUCUUAACUUUAACUAAAAAAACUAAGAACCGGUUCUUAAAUAAGGACUUUAAGAACCGGUUCUUAGCUUUUUAGUUAAAAGUUAAAAAACAGUUUCUUAACUUCCGCUAAGAACACCACUCUAAGAACUCCGGGUUAAUCAUGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013831146.1	ncRNA:24   CUAGUACUAAUUGGGCCUCAAGAA   1   ||*||||||||||||||||||||| targets:1699   GAGCAUGAUUAACCCGGAGUUCUU   1722 Target Full Sequence	0.0	PREDICTED: Brassica napus putative glucuronosyltransferase PGSIP8 (LOC106390637), mRNA	putative glucuronosyltransferase PGSIP8(LOC106390637)	coding protein	psRNATarget
XM_013814934.1	ncRNA:24   CUAGUACUAAUUGGGCCUCAAGAA   1   ||*||||||||||=|||||||||| targets:924   GACCAUGAUUAACUCGGAGUUCUU   947 Target Full Sequence	1.5	PREDICTED: Brassica napus ethylene-responsive transcription factor ERF023-like (LOC106375033), mRNA	ethylene-responsive transcription factor ERF023-like(LOC106375033)	coding protein	psRNATarget
XM_013888792.1	ncRNA:24   CUAGUACUAAUUGGGCCUCAAGAA   1   ||*|||||||||||||*||||||| targets:1770   GACCAUGAUUAACCCGAAGUUCUU   1793 Target Full Sequence	1.5	PREDICTED: Brassica napus UDP-glycosyltransferase 71B5-like (LOC106446953), mRNA	UDP-glycosyltransferase 71B5-like(LOC106446953)	coding protein	psRNATarget
XM_013817285.1	ncRNA:24   CUAGUACUAAUUGGGCCUCAAGAA   1   ||*|||||||||||||*||||||| targets:2816   GACCAUGAUUAACCCGAAGUUCUU   2839 Target Full Sequence	1.5	PREDICTED: Brassica napus UDP-glycosyltransferase 71B5-like (LOC106377115), mRNA	UDP-glycosyltransferase 71B5-like(LOC106377115)	coding protein	psRNATarget