ncRNA ID | novel_bna_miR500 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrA5:30000687-30000887 [+] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR537601 |
Length | 25 |
Mature sequence(if miRNA) | 1 - ACAUUGACUCUAACAGAAGUUAAUC - 25 |
Stem-loop(if miRNA) |
--                      A     AU    C         C    U     UG            -UUU     -            ----    AC   ACAUUGACUCUAACAGAAGUUA UCAAC  UUAA AAGAUAAGA GACG CGUUU  AUAUAUGUAUUU    AAAAA AUAUGUUCAUUU    CGGA  U   |||||||||||||||||||||| |||||  |||| ||||||||| |||| |||||  ||||||||||||    ||||| ||||||||||||    ||||  C   UGUAACUGAGAUUGUCUUCAAU AGUUG  AAUU UUCUAUUCU CUGC GCAAA  UAUAUAUAUAAA    UUUUU UAUACAAGUAAG    GCCU  A GA                      C     GC    A         U    U     UA            UUUU     A            UCAU    AA |
Stem-loop sequence | ACAUUGACUCUAACAGAAGUUAAUCAACAUUUAACAAGAUAAGACGACGUCGUUUUGAUAUAUGUAUUUUUUAAAAAAUAUGUUCAUUUCGGAACUCAAAUCCGUACUGAAUGAACAUAUAUUUUUUUUUAAAUAUAUAUAUAUAAACGUCGUCUUCUUAUCUUAUUAACGGUUGACUAACUUCUGUUAGAGUCAAUGUAG |