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BaseInfo

ncRNA ID ath-miR859
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:22149718-22149843 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 18 - UCUCUCUGUUGUGAAGUCAAA - 38
Stem-loop(if miRNA)                A    C           GU             GAAUUAACAUUA       U
AAAGGUAGAUGUCGA AUCU UCUGUUGUGAA  CAAACAUGAGUAU            AUGGAUC U
||||||||||||||| |||| |||||||||||  |||||||||||||            ||||||| U
UUUCUAUCUGCAGCU UAGA AGAUGACACUU  GUUUGUACUCAUA            UACUUAG U
               A    U           UG             -----------A       U
Stem-loop sequence AAAGGUAGAUGUCGAAAUCUCUCUGUUGUGAAGUCAAACAUGAGUAUGAAUUAACAUUAAUGGAUCUUUUUGAUUCAUAAUACUCAUGUUUGGUUUCACAGUAGAUAGAUAUCGACGUCUAUCUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_180271.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=|||||||||||||||
targets:613   UUUGAUUUCACAACAGAGAGA   633

1.0 Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA F-box and associated interaction domains-containing protein(AT3G17265) coding protein psRNATarget
NM_123011.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  ||||||||=||||||||||||
targets:736   UUUGACUUUACAACAGAGAGA   756

1.5 Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA F-box and associated interaction domains-containing protein(AT5G36200) coding protein psRNATarget
AY773843.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||||||||||||||=
targets:235   UUUGAUUUCACAACAGAGAGG   255

2.0 Arabidopsis thaliana clone pENTR221-At2g13130 hypothetical protein (At2g13130) mRNA, complete cds NA coding protein psRNATarget
AY227632.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||||||||||||||=
targets:625   UUUGAUUUCACAACAGAGAGG   645

2.0 Arabidopsis thaliana hypothetical protein (At2g13130/T17A11.12) mRNA, complete cds; alternatively spliced NA coding protein psRNATarget
BX819529.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||||||||||||||=
targets:588   UUUGAUUUCACAACAGAGAGG   608

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB87ZD05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY227633.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||||||||||||||=
targets:625   UUUGAUUUCACAACAGAGAGG   645

2.0 Arabidopsis thaliana hypothetical protein (At2g13130/T17A11.12) mRNA, complete cds; alternatively spliced NA coding protein psRNATarget
NM_112556.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||=||||||||||||
targets:508   UUUGAUUUUACAACAGAGAGA   528

2.5 Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA F-box and associated interaction domains-containing protein(AT3G16820) coding protein psRNATarget
NM_113170.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||=||||||||||||
targets:502   UUUGAUUUUACAACAGAGAGA   522

2.5 Arabidopsis thaliana F-box family protein partial mRNA F-box family protein(AT3G22710) coding protein psRNATarget
NM_112564.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||=||||||||||||
targets:658   UUUGAUUUUACAACAGAGAGA   678

2.5 Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA F-box and associated interaction domains-containing protein(AT3G16880) coding protein psRNATarget
BT029000.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||||||||=||||||
targets:712   UUUGAUUUCACAACGGAGAGA   732

2.5 Arabidopsis thaliana At2g18780 mRNA, complete cds NA coding protein psRNATarget
NM_113133.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||=||||||||||||
targets:670   UUUGAUUUUACAACAGAGAGA   690

2.5 Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA F-box and associated interaction domains-containing protein(AT3G22350) coding protein psRNATarget
NM_112637.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=|||=|||||||||||
targets:655   UUUGAUUUCGCAACAGAGAGA   675

2.5 Arabidopsis thaliana F-box and associated interaction domains-containing protein mRNA F-box and associated interaction domains-containing protein(AT3G17570) coding protein psRNATarget
NM_114811.3
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||=||||||||||||
targets:694   UUUGAUUUUACAACAGAGAGA   714

2.5 Arabidopsis thaliana F-box family protein partial mRNA F-box family protein(AT3G49510) coding protein psRNATarget
BT010151.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||=||||||||||||
targets:694   UUUGAUUUUACAACAGAGAGA   714

2.5 Arabidopsis thaliana At3g49510 gene, complete cds NA coding protein psRNATarget
NM_123040.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||=||||||||||||
targets:718   UUUGAUUUUACAACAGAGAGA   738

2.5 Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA F-box and associated interaction domains-containing protein(AT5G36820) coding protein psRNATarget
NM_123030.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||=||||||||||||
targets:718   UUUGAUUUUACAACAGAGAGA   738

2.5 Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA F-box and associated interaction domains-containing protein(AT5G36730) coding protein psRNATarget
AK227840.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||=||||||||||||
targets:743   UUUGAUUUUACAACAGAGAGA   763

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-41-F05 NA coding protein psRNATarget
AY227634.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||||||||=||||||
targets:735   UUUGAUUUCACAACGGAGAGA   755

2.5 Arabidopsis thaliana hypothetical protein (At2g18780/MSF3.16) mRNA, complete cds NA coding protein psRNATarget
NM_127434.4
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||||||||=||||||
targets:759   UUUGAUUUCACAACGGAGAGA   779

2.5 Arabidopsis thaliana F-box and associated interaction domains-containing protein mRNA F-box and associated interaction domains-containing protein(AT2G18780) coding protein psRNATarget
NM_128312.2
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=|||||||||||||*|
targets:604   UUUGAUUUCACAACAGAGACA   624

2.5 Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA F-box and associated interaction domains-containing protein(AT2G27520) coding protein psRNATarget
NM_113369.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=|||||||*|||||||
targets:694   UUUGAUUUCACAAGAGAGAGA   714

2.5 Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA F-box and associated interaction domains-containing protein(AT3G24580) coding protein psRNATarget
NM_114812.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=||||||||*||||||
targets:694   UUUGAUUUCACAACCGAGAGA   714

2.5 Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA F-box and associated interaction domains-containing protein(AT3G49520) coding protein psRNATarget
NM_113011.2
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||=|||*|||||||||||
targets:780   UUUGAUUUCUCAACAGAGAGA   800

2.5 Arabidopsis thaliana F-box/associated interaction domain protein mRNA F-box/associated interaction domain protein(AT3G21170) coding protein psRNATarget
BX818288.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||||||||||*||||||*
targets:146   UUUGACUUCACAAGAGAGAGU   166

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL70ZH12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT015465.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||||||||||*||||||*
targets:616   UUUGACUUCACAAGAGAGAGU   636

2.5 Arabidopsis thaliana At1g11810 mRNA sequence NA coding protein psRNATarget
BT029542.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||||||||||*||||||*
targets:670   UUUGACUUCACAAGAGAGAGU   690

2.5 Arabidopsis thaliana At1g11810 mRNA, complete cds NA coding protein psRNATarget
NM_101053.3
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  |||||||||||||*||||||*
targets:670   UUUGACUUCACAAGAGAGAGU   690

2.5 Arabidopsis thaliana F-box associated ubiquitination effector family protein partial mRNA F-box associated ubiquitination effector family protein(AT1G11810) coding protein psRNATarget
BT005624.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  **|||=||||*||||||||||
targets:1411   CAUGAUUUCAGAACAGAGAGA   1431

2.5 Arabidopsis thaliana clone U50144 unknown protein (At5g03670) mRNA, complete cds NA coding protein psRNATarget
BX831345.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  **|||=||||*||||||||||
targets:1556   CAUGAUUUCAGAACAGAGAGA   1576

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS7ZF12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT004312.1
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  **|||=||||*||||||||||
targets:1576   CAUGAUUUCAGAACAGAGAGA   1596

2.5 Arabidopsis thaliana clone RAFL16-03-D02 (R50144) unknown protein (At5g03670) mRNA, complete cds NA coding protein psRNATarget
NM_120448.3
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  **|||=||||*||||||||||
targets:1576   CAUGAUUUCAGAACAGAGAGA   1596

2.5 Arabidopsis thaliana histone-lysine N-methyltransferase SETD1B-like protein (TRM28), mRNA histone-lysine N-methyltransferase SETD1B-like protein(TRM28) coding protein psRNATarget
NM_180522.3
ncRNA:21   AAACUGAAGUGUUGUCUCUCU   1
  **|||||*|||||=|||||||
targets:46   CCUGACUCCACAAUAGAGAGA   66

2.5 Arabidopsis thaliana calcium-dependent protein kinase 19 (CDPK19), mRNA calcium-dependent protein kinase 19(CDPK19) coding protein psRNATarget

Reference

1 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).
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