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BaseInfo

ncRNA ID	novel_bna_miR488
Species	Brassica napus
Class	miRNA
Genome position	ChrA2:7162285-7162376 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537601;SRR537603;SRR538225
Length	24
Mature sequence(if miRNA)	69 - GCUCUCUUUACUUCUGCCACCAUC - 92
Stem-loop(if miRNA)	--  U  A      -            AG  G  -AUUA      AG   UG UG CAGAAG AAAGAGAGCACA  CC GG     GCAAAA  A   || || |||||| ||||||||||||  || ||     ||||||   AC AC GUCUUC UUUCUCUCGUGU  GG CU     CGUUUU  G CU  C  C      A            GA  G  GUUCC      GA
Stem-loop sequence	UGUUGACAGAAGAAAGAGAGCACAAGCCGGGAUUAGCAAAAAGAGAGUUUUGCCCUUGUCGGGAGUGUGCUCUCUUUACUUCUGCCACCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013823087.1	ncRNA:24   CUACCACCGUCUUCAUUUCUCUCG   1   |=|||||*==|||||||||||||| targets:572   GGUGGUGUUGGAAGUAAAGAGAGC   595 Target Full Sequence	3.0	PREDICTED: Brassica napus probable mediator of RNA polymerase II transcription subunit 26b (LOC106382985), mRNA	probable mediator of RNA polymerase II transcription subunit 26b(LOC106382985)	coding protein	psRNATarget
XM_013878991.1	ncRNA:24   CUAC-CACCGUCUUCAUUUCUCUCG   1   ||*|-|||*==|||||||||||||| targets:632   GAAGAGUGUUGGAAGUAAAGAGAGC   656 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106437965 (LOC106437965), transcript variant X1, mRNA	uncharacterized LOC106437965(LOC106437965)	coding protein	psRNATarget
XM_013878992.1	ncRNA:24   CUAC-CACCGUCUUCAUUUCUCUCG   1   ||*|-|||*==|||||||||||||| targets:628   GAAGAGUGUUGGAAGUAAAGAGAGC   652 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106437965 (LOC106437965), transcript variant X2, mRNA	uncharacterized LOC106437965(LOC106437965)	coding protein	psRNATarget
XM_013868922.1	ncRNA:24   CUAC-CACCGUCUUCAUUUCUCUCG   1   ||*|-|||*==|||||||||||||| targets:606   GAAGAGUGUUGGAAGUAAAGAGAGC   630 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106428172 (LOC106428172), transcript variant X1, mRNA	uncharacterized LOC106428172(LOC106428172)	coding protein	psRNATarget
XM_013868923.1	ncRNA:24   CUAC-CACCGUCUUCAUUUCUCUCG   1   ||*|-|||*==|||||||||||||| targets:602   GAAGAGUGUUGGAAGUAAAGAGAGC   626 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106428172 (LOC106428172), transcript variant X2, mRNA	uncharacterized LOC106428172(LOC106428172)	coding protein	psRNATarget