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BaseInfo

ncRNA ID novel_bna_miR478
Species Brassica napus
Class miRNA
Genome position ChrC7:6237079-6237150 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537601;SRR538225
Length 19
Mature sequence(if miRNA) 1 - CGGAAUUUCGUCGGAAAUC - 19
Stem-loop(if miRNA)     A    GUCGGAAAUCUGUCCGUCAGAAUUUC
CGGA UUUC                          G
|||| ||||                          U
CAGU CUUA                          C
    -    AAGUAGCUUUAAAGACUGCUUAAAGG
Stem-loop sequence CGGAAUUUCGUCGGAAAUCUGUCCGUCAGAAUUUCGUCGGAAAUUCGUCAGAAAUUUCGAUGAAAUUCUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013888825.1
ncRNA:19   CUAAAGGCUGCUUUAAGGC   1
  ||||||||=||||||||||
targets:768   GAUUUCCGGCGAAAUUCCG   786

1.5 PREDICTED: Brassica napus xyloglucan galactosyltransferase KATAMARI1 homolog (LOC106446988), mRNA xyloglucan galactosyltransferase KATAMARI1 homolog(LOC106446988) coding protein psRNATarget
XM_013836377.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106396079 (LOC106396079), mRNA uncharacterized LOC106396079(LOC106396079) coding protein psRNATarget
XM_013846264.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106405729 (LOC106405729), mRNA uncharacterized LOC106405729(LOC106405729) coding protein psRNATarget
XM_013836376.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106396078 (LOC106396078), mRNA uncharacterized LOC106396078(LOC106396078) coding protein psRNATarget
XM_013797133.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106357471 (LOC106357471), mRNA uncharacterized LOC106357471(LOC106357471) coding protein psRNATarget
XM_013820162.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106380408 (LOC106380408), mRNA uncharacterized LOC106380408(LOC106380408) coding protein psRNATarget
XM_013840086.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106399624 (LOC106399624), mRNA uncharacterized LOC106399624(LOC106399624) coding protein psRNATarget
XM_013830859.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106390405 (LOC106390405), mRNA uncharacterized LOC106390405(LOC106390405) coding protein psRNATarget
XM_013828940.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106388792 (LOC106388792), mRNA uncharacterized LOC106388792(LOC106388792) coding protein psRNATarget
XM_013886278.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106444861 (LOC106444861), mRNA uncharacterized LOC106444861(LOC106444861) coding protein psRNATarget
XM_013793360.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106353604 (LOC106353604), mRNA uncharacterized LOC106353604(LOC106353604) coding protein psRNATarget
XM_013855724.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106415101 (LOC106415101), mRNA uncharacterized LOC106415101(LOC106415101) coding protein psRNATarget
XM_013850865.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106410374 (LOC106410374), mRNA uncharacterized LOC106410374(LOC106410374) coding protein psRNATarget
XM_013850869.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106410378 (LOC106410378), mRNA uncharacterized LOC106410378(LOC106410378) coding protein psRNATarget
XM_013828941.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106388794 (LOC106388794), mRNA uncharacterized LOC106388794(LOC106388794) coding protein psRNATarget
XM_013815065.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106375204 (LOC106375204), mRNA uncharacterized LOC106375204(LOC106375204) coding protein psRNATarget
XM_013826862.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106387049 (LOC106387049), mRNA uncharacterized LOC106387049(LOC106387049) coding protein psRNATarget
XM_013850863.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106410371 (LOC106410371), mRNA uncharacterized LOC106410371(LOC106410371) coding protein psRNATarget
XM_013850864.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106410372 (LOC106410372), mRNA uncharacterized LOC106410372(LOC106410372) coding protein psRNATarget
XM_013820161.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106380407 (LOC106380407), mRNA uncharacterized LOC106380407(LOC106380407) coding protein psRNATarget
XM_013822258.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106382258 (LOC106382258), mRNA uncharacterized LOC106382258(LOC106382258) coding protein psRNATarget
XM_013855723.1
ncRNA:19   CUA-AAGGCUGCUUUAAGGC   1
  |||-||||||||||||||||
targets:1344   GAUAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106415100 (LOC106415100), mRNA uncharacterized LOC106415100(LOC106415100) coding protein psRNATarget
XM_013820163.1
ncRNA:19   CUAAAGGCUGCUUUAAGGC   1
  *|*||||||||||||||||
targets:1345   AAAUUCCGACGAAAUUCCG   1363

2.0 PREDICTED: Brassica napus uncharacterized LOC106380410 (LOC106380410), mRNA uncharacterized LOC106380410(LOC106380410) coding protein psRNATarget
XM_013827173.1
ncRNA:19   CUAAAGGCUGCUUUAAGGC   1
  |*||||||=||||||||||
targets:1351   GCUUUCCGGCGAAAUUCCG   1369

2.5 PREDICTED: Brassica napus LRR receptor-like serine/threonine-protein kinase GSO2 (LOC106387339), mRNA LRR receptor-like serine/threonine-protein kinase GSO2(LOC106387339) coding protein psRNATarget
XM_013795208.1
ncRNA:19   CUAAAGGCUGCUUUAAGGC   1
  *||||||||*|||||||||
targets:886   AAUUUCCGAGGAAAUUCCG   904

2.5 PREDICTED: Brassica napus PYK10-binding protein 1-like (LOC106355223), mRNA PYK10-binding protein 1-like(LOC106355223) coding protein psRNATarget
XM_013793437.1
ncRNA:19   CUAAAGGCUGCUUUAAGGC   1
  |=|*|=|||||||||||||
targets:168   GGUGUUCGACGAAAUUCCG   186

3.0 PREDICTED: Brassica napus uncharacterized LOC106353662 (LOC106353662), mRNA uncharacterized LOC106353662(BNAA07G21890D) coding protein psRNATarget
XM_013846717.1
ncRNA:19   CUAAAGGCUGCUUUAAGGC   1
  |||*|=||||||||||||*
targets:513   GAUGUUCGACGAAAUUCCU   531

3.0 PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At4g14850-like (LOC106406122), mRNA pentatricopeptide repeat-containing protein At4g14850-like(LOC106406122) coding protein psRNATarget
XM_013846715.1
ncRNA:19   CUAAAGGCUGCUUUAAGGC   1
  |||*|=||||||||||||*
targets:513   GAUGUUCGACGAAAUUCCU   531

3.0 PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At4g14850-like (LOC106406121), mRNA pentatricopeptide repeat-containing protein At4g14850-like(LOC106406121) coding protein psRNATarget
XM_013843776.1
ncRNA:19   CUAAAGGCUGCUUUAAGGC   1
  |||*|=||||||||||||*
targets:513   GAUGUUCGACGAAAUUCCU   531

3.0 PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At4g14850-like (LOC106402954), mRNA pentatricopeptide repeat-containing protein At4g14850-like(LOC106402954) coding protein psRNATarget
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