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BaseInfo

ncRNA ID novel_bna_miR470
Species Brassica napus
Class miRNA
Genome position ChrC6:28345249-28345336 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537601;SRR537603;SRR537609;SRR537612;SRR538253
Length 23
Mature sequence(if miRNA) 1 - GGGAAAUGGAGUGAUGAACAAUC - 23
Stem-loop(if miRNA) --                     U       CCU      - UA
  GGGAAAUGGAGUGAUGAACAA CAAAAAA   AUUACU C  U
  ||||||||||||||||||||| |||||||   |||||| |  U
  CUCUUUAUCUUACUAUUUGUU GUUUUUU   UAAUGA G  U
CA                     U       UAC      C UA
Stem-loop sequence GGGAAAUGGAGUGAUGAACAAUCAAAAAACCUAUUACUCUAUUUAUGCAGUAAUCAUUUUUUUGUUUGUUUAUCAUUCUAUUUCUCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013854972.1
ncRNA:23   CUAACAAGUAGUGAGGUAAAGGG   1
  *=|||||||||*|||||||||||
targets:1189   UGUUGUUCAUCUCUCCAUUUCCC   1211

1.5 PREDICTED: Brassica napus GDSL esterase/lipase At5g33370-like (LOC106414292), mRNA GDSL esterase/lipase At5g33370-like(LOC106414292) coding protein psRNATarget