Search result

BaseInfo

ncRNA ID	novel_bna_miR463
Species	Brassica napus
Class	miRNA
Genome position	ChrC3:53322255-53322384 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537601
Length	23
Mature sequence(if miRNA)	108 - GCUGUUUUCUUGUAGUGACGAUC - 130
Stem-loop(if miRNA)	--                                                              A   UCGUCACUACAAGAAAACAGCGACAUACUGAGGGAAAAAAUCGUCGGUAUGUCGUCGGAAUA C   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   AGCAGUGAUGUUCUUUUGUCGCUGUAUGACUCCCUUUUUUAGCAGCCAUACAGCAGCCUUAU G CU                                                              U
Stem-loop sequence	UCGUCACUACAAGAAAACAGCGACAUACUGAGGGAAAAAAUCGUCGGUAUGUCGUCGGAAUAACGUUAUUCCGACGACAUACCGACGAUUUUUUCCCUCAGUAUGUCGCUGUUUUCUUGUAGUGACGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013850237.1	ncRNA:23   CUAGCAGUGAUGUUCUUUUGUCG   1   *=|||*||||||||||||||||| targets:607   UGUCGACACUACAAGAAAACAGC   629 Target Full Sequence	1.0	PREDICTED: Brassica napus uncharacterized LOC106409644 (LOC106409644), mRNA	uncharacterized LOC106409644(LOC106409644)	coding protein	psRNATarget
XM_013809081.1	ncRNA:23   CUAGCAGUGAUGUUCUUUUGUCG   1   *=**||||||||||||||||||* targets:444   AGAAGUCACUACAAGAAAACAGG   466 Target Full Sequence	1.0	PREDICTED: Brassica napus uncharacterized LOC106368989 (LOC106368989), mRNA	uncharacterized LOC106368989(LOC106368989)	coding protein	psRNATarget
XM_013858153.1	ncRNA:23   CUAGCAGUGAUGUUCUUUUGUCG   1   ||*=|*||||||||||||||||= targets:711   GACUGACACUACAAGAAAACAGU   733 Target Full Sequence	2.0	PREDICTED: Brassica napus putative ubiquitin-conjugating enzyme E2 38 (LOC106417334), mRNA	putative ubiquitin-conjugating enzyme E2 38(LOC106417334)	coding protein	psRNATarget
XM_013874184.1	ncRNA:23   CUAGCAGUGAUGUUCUUUUGUCG   1   ******||||||||||||||||| targets:823   ACCAAACACUACAAGAAAACAGC   845 Target Full Sequence	2.0	PREDICTED: Brassica napus ribosomal RNA small subunit methyltransferase F-like (LOC106433340), transcript variant X1, mRNA	ribosomal RNA small subunit methyltransferase F-like(LOC106433340)	coding protein	psRNATarget
XM_013874917.1	ncRNA:23   CUAGCAGUGAUGUUCUUUUGUCG   1   **|=||||=||||||||||*||| targets:63   UCUUGUCAUUACAAGAAAAAAGC   85 Target Full Sequence	2.5	PREDICTED: Brassica napus UDP-glycosyltransferase 71D1-like (LOC106434082), mRNA	UDP-glycosyltransferase 71D1-like(LOC106434082)	coding protein	psRNATarget