Search result

BaseInfo

ncRNA ID novel_bna_miR459
Species Brassica napus
Class miRNA
Genome position ChrA1:36439750-36439897 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537601;SRR538225
Length 21
Mature sequence(if miRNA) 128 - CUCGGUAUAUUCCGAGGAAUC - 148
Stem-loop(if miRNA) --           UUU       C AGG          AUUCCCAAU    -----    CGAGGAAUGUUUCGUCGAA
  UUCCUCGGAAU   CCGAGGG C   UUCCUCAGAA         GAAC     AUUC                   A
  |||||||||||   ||||||| |   ||||||||||         ||||     ||||
  AAGGAGCCUUA   GGCUCCC G   AAGGAGUCUU         AGCU     AAGG                   C
CU           UAU       U CGG          -----AUAA    ACCUU    CUACCAGGUUAGGAGCCUU
Stem-loop sequence UUCCUCGGAAUUUUCCGAGGGCCAGGUUCCUCAGAAAUUCCCAAUGAACAUUCCGAGGAAUGUUUCGUCGAAACUUCCGAGGAUUGGACCAUCGGAAUUCCAUCGAAAUAUUCUGAGGAAGGCGUCCCUCGGUAUAUUCCGAGGAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013868972.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  **|||||||||||||||||||
targets:266   AUUUCCUCGGAAUAUACCGAG   286

0.0 PREDICTED: Brassica napus uncharacterized LOC106428220 (LOC106428220), mRNA uncharacterized LOC106428220(LOC106428220) coding protein psRNATarget
XM_013868972.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  **|||||||||||||||||||
targets:319   AUUUCCUCGGAAUAUACCGAG   339

0.0 PREDICTED: Brassica napus uncharacterized LOC106428220 (LOC106428220), mRNA uncharacterized LOC106428220(LOC106428220) coding protein psRNATarget
XM_013836376.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106396078 (LOC106396078), mRNA uncharacterized LOC106396078(LOC106396078) coding protein psRNATarget
XM_013830859.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106390405 (LOC106390405), mRNA uncharacterized LOC106390405(LOC106390405) coding protein psRNATarget
XM_013815065.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106375204 (LOC106375204), mRNA uncharacterized LOC106375204(LOC106375204) coding protein psRNATarget
XM_013855724.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106415101 (LOC106415101), mRNA uncharacterized LOC106415101(LOC106415101) coding protein psRNATarget
XM_013886278.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106444861 (LOC106444861), mRNA uncharacterized LOC106444861(LOC106444861) coding protein psRNATarget
XM_013828941.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106388794 (LOC106388794), mRNA uncharacterized LOC106388794(LOC106388794) coding protein psRNATarget
XM_013797133.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106357471 (LOC106357471), mRNA uncharacterized LOC106357471(LOC106357471) coding protein psRNATarget
XM_013822258.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106382258 (LOC106382258), mRNA uncharacterized LOC106382258(LOC106382258) coding protein psRNATarget
XM_013799929.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106360349 (LOC106360349), mRNA uncharacterized LOC106360349(LOC106360349) coding protein psRNATarget
XM_013850863.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106410371 (LOC106410371), mRNA uncharacterized LOC106410371(LOC106410371) coding protein psRNATarget
XM_013850864.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106410372 (LOC106410372), mRNA uncharacterized LOC106410372(LOC106410372) coding protein psRNATarget
XM_013855723.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106415100 (LOC106415100), mRNA uncharacterized LOC106415100(LOC106415100) coding protein psRNATarget
XM_013793360.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106353604 (LOC106353604), mRNA uncharacterized LOC106353604(LOC106353604) coding protein psRNATarget
XM_013850865.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106410374 (LOC106410374), mRNA uncharacterized LOC106410374(LOC106410374) coding protein psRNATarget
XM_013820162.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106380408 (LOC106380408), mRNA uncharacterized LOC106380408(LOC106380408) coding protein psRNATarget
XM_013850869.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106410378 (LOC106410378), mRNA uncharacterized LOC106410378(LOC106410378) coding protein psRNATarget
XM_013826862.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106387049 (LOC106387049), mRNA uncharacterized LOC106387049(LOC106387049) coding protein psRNATarget
XM_013820161.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106380407 (LOC106380407), mRNA uncharacterized LOC106380407(LOC106380407) coding protein psRNATarget
XM_013846264.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106405729 (LOC106405729), mRNA uncharacterized LOC106405729(LOC106405729) coding protein psRNATarget
XM_013820163.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106380410 (LOC106380410), mRNA uncharacterized LOC106380410(LOC106380410) coding protein psRNATarget
XM_013836377.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106396079 (LOC106396079), mRNA uncharacterized LOC106396079(LOC106396079) coding protein psRNATarget
XM_013841268.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106400872 (LOC106400872), mRNA uncharacterized LOC106400872(LOC106400872) coding protein psRNATarget
XM_013840086.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*|||||||||||||||||
targets:1030   GAUCCCUCGGAAUAUACCGAG   1050

1.0 PREDICTED: Brassica napus uncharacterized LOC106399624 (LOC106399624), mRNA uncharacterized LOC106399624(LOC106399624) coding protein psRNATarget
XM_013836376.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106396078 (LOC106396078), mRNA uncharacterized LOC106396078(LOC106396078) coding protein psRNATarget
XM_013830859.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106390405 (LOC106390405), mRNA uncharacterized LOC106390405(LOC106390405) coding protein psRNATarget
XM_013815065.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106375204 (LOC106375204), mRNA uncharacterized LOC106375204(LOC106375204) coding protein psRNATarget
XM_013855724.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106415101 (LOC106415101), mRNA uncharacterized LOC106415101(LOC106415101) coding protein psRNATarget
XM_013886278.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106444861 (LOC106444861), mRNA uncharacterized LOC106444861(LOC106444861) coding protein psRNATarget
XM_013828941.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106388794 (LOC106388794), mRNA uncharacterized LOC106388794(LOC106388794) coding protein psRNATarget
XM_013797133.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106357471 (LOC106357471), mRNA uncharacterized LOC106357471(LOC106357471) coding protein psRNATarget
XM_013822258.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106382258 (LOC106382258), mRNA uncharacterized LOC106382258(LOC106382258) coding protein psRNATarget
XM_013799929.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106360349 (LOC106360349), mRNA uncharacterized LOC106360349(LOC106360349) coding protein psRNATarget
XM_013850863.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106410371 (LOC106410371), mRNA uncharacterized LOC106410371(LOC106410371) coding protein psRNATarget
XM_013850864.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106410372 (LOC106410372), mRNA uncharacterized LOC106410372(LOC106410372) coding protein psRNATarget
XM_013855723.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106415100 (LOC106415100), mRNA uncharacterized LOC106415100(LOC106415100) coding protein psRNATarget
XM_013793360.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106353604 (LOC106353604), mRNA uncharacterized LOC106353604(LOC106353604) coding protein psRNATarget
XM_013850865.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106410374 (LOC106410374), mRNA uncharacterized LOC106410374(LOC106410374) coding protein psRNATarget
XM_013820162.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106380408 (LOC106380408), mRNA uncharacterized LOC106380408(LOC106380408) coding protein psRNATarget
XM_013850869.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106410378 (LOC106410378), mRNA uncharacterized LOC106410378(LOC106410378) coding protein psRNATarget
XM_013826862.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106387049 (LOC106387049), mRNA uncharacterized LOC106387049(LOC106387049) coding protein psRNATarget
XM_013820161.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106380407 (LOC106380407), mRNA uncharacterized LOC106380407(LOC106380407) coding protein psRNATarget
XM_013846264.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106405729 (LOC106405729), mRNA uncharacterized LOC106405729(LOC106405729) coding protein psRNATarget
XM_013820163.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106380410 (LOC106380410), mRNA uncharacterized LOC106380410(LOC106380410) coding protein psRNATarget
XM_013836377.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106396079 (LOC106396079), mRNA uncharacterized LOC106396079(LOC106396079) coding protein psRNATarget
XM_013841268.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106400872 (LOC106400872), mRNA uncharacterized LOC106400872(LOC106400872) coding protein psRNATarget
XM_013840086.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106399624 (LOC106399624), mRNA uncharacterized LOC106399624(LOC106399624) coding protein psRNATarget
XM_013828940.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  *=||||||||||||*||||||
targets:1056   AGUUCCUCGGAAUAAACCGAG   1076

1.5 PREDICTED: Brassica napus uncharacterized LOC106388792 (LOC106388792), mRNA uncharacterized LOC106388792(LOC106388792) coding protein psRNATarget
XM_013868972.1
ncRNA:21   CU--AAGGAGCCUUAUAUGGCUC   1
  ||--|||||||||||||||||||
targets:211   GAAUUUCCUCGGAAUAUACCGAG   233

2.5 PREDICTED: Brassica napus uncharacterized LOC106428220 (LOC106428220), mRNA uncharacterized LOC106428220(LOC106428220) coding protein psRNATarget
XM_013828940.1
ncRNA:21   CUAAGGAGCCUUAUAUGGCUC   1
  |||*||||||||||||*||||
targets:1030   GAUCCCUCGGAAUAUAGCGAG   1050

2.5 PREDICTED: Brassica napus uncharacterized LOC106388792 (LOC106388792), mRNA uncharacterized LOC106388792(LOC106388792) coding protein psRNATarget
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