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BaseInfo

ncRNA ID	ath-miRf10591-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - ACUCGACCUCGUGGUCGAGUGGU - NA
Stem-loop(if miRNA)	C           U            ---U    ---     C  CACCU    AUC        ACGUCACUCUA     AA        ----U      CACCACUGUUAAAU  CGAGGCCGACUCA UCA AUCACUCGACC CGAGGUCGAGUG    CUUC   ACCUC AC     GACC   ACUCGAUC           CCUUG  GUCGAGUA     CUUCAU              GC             A ||| ||||||||||| ||||||||||||    ||||   ||||| ||     ||||   ||||||||           |||||  ||||||||     ||||||              ||             A AGU UGGUGAGCUGG GCUCCAGCUCAU    GAAG   UGGAG UG     CUGG   UGAGCUGG           GGGAC  CAGCUCAU     GAAGUA              AG             U    U           U            CUUC    UUC     U  ----U    ---        -----------     --        CCCCU      ----------UUAA  UAGAGCAAAAUGC
Stem-loop sequence	UCACAUCACUCGACCUCGAGGUCGAGUGUCUUCACCUCCACCACCUGACCAUCACUCGAUCACGUCACUCUACCUUGAAGUCGAGUAUCUUCAUCACCACUGUUAAAUGCCGAGGCCGACUCAAAUCGUAAAACGAGAUGAAAUUAUGAAGUCCCCUACUCGACCAGGGGGUCGAGUGGUCUGUUGAGGUCUUGAAGCUUCUACUCGACCUCGUGGUCGAGUGGUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_103391.1	ncRNA:23   UGGUGAGCUGGUGCUCCAGCUCA   1   ||||||||||||||||||||||| targets:1149   ACCACUCGACCACGAGGUCGAGU   1171 Target Full Sequence	0.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
EF183042.1	ncRNA:23   UGGUGAGCUGGUGCUCCAGCUCA   1   ||||||||||||||||||||||| targets:1525   ACCACUCGACCACGAGGUCGAGU   1547 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   UGGUGAGCUGGUGCUCCAGCUCA   1   |=|||||||||*||||||||||| targets:1616   AUCACUCGACCCCGAGGUCGAGU   1638 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:23   UGGUGAGCUGGUGCUCCAGCUCA   1   |||||||||||||*||||||||| targets:448   ACCACUCGACCACCAGGUCGAGU   470 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:23   UGGUGAGCUGGUGCUCCAGCUCA   1   *=||||||||||=|||||||||| targets:515   UUCACUCGACCAUGAGGUCGAGU   537 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:23   UGGUGAGCUGGUGCUCCAGCUCA   1   |||||||||||*||||||||||| targets:853   ACCACUCGACCCCGAGGUCGAGU   875 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183005.1	ncRNA:23   UGGUGAGCUGGUGCUCCAGCUCA   1   =*||||||||||||=|||||||| targets:1922   GGCACUCGACCACGGGGUCGAGU   1944 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183005.1	ncRNA:23   UGGUGAGCUGGUGCUCCAGCUCA   1   =*|||||||||*||||||||||| targets:1863   GGCACUCGACCUCGAGGUCGAGU   1885 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:23   UG-GUGAGCUGGUGCUCCAGCUCA   1   ||-|||||*||||*|||||||||| targets:573   ACUCACUCUACCAAGAGGUCGAGU   596 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:23   UGGUGAGCUGGUGCUCCAGCUCA   1   |||||||*|||||*||||||||| targets:43   ACCACUCAACCACAAGGUCGAGU   65 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:23   UGGUGAGCUGGUGCUCCAGCUCA   1   ||=||||*||||||*|||||||| targets:641   ACUACUCAACCACGUGGUCGAGU   663 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget