Search result

BaseInfo

ncRNA ID	novel_bna_miR442
Species	Brassica napus
Class	miRNA
Genome position	ChrA1:16484571-16484775 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363495;SRR1363496
Length	24
Mature sequence(if miRNA)	182 - AUUCUAUUAUAGAGUUGGAUUUGC - 205
Stem-loop(if miRNA)	--                              G                ---     C                    U     U           C  G   U   AUUCUAUUAUAGAGUUGGAUUUGCUCCAAU GUUCACUCUAUAAUAG   AGUUA UCUAUAAUAGAGUGAAAUAU GAGUA UCUUGUUUUUU AC CUA A   |||||||||||||||||||||||||||||| ||||||||||||||||   ||||| |||||||||||||||||||| ||||| ||||||||||| || |||   UGAGAUAAUAUCUCAACUUAAACGAGGUUA CAAGUGAGAUAUUAUU   UCAAU AGAUAUUAUCUCACUUUAUA CUCAU AGAAUAAAAAA UG GGU U AU                              A                GAG     A                    U     U           A  A   U
Stem-loop sequence	AUUCUAUUAUAGAGUUGGAUUUGCUCCAAUGGUUCACUCUAUAAUAGAGUUACUCUAUAAUAGAGUGAAAUAUUGAGUAUUCUUGUUUUUUCACGCUAUAUUUGGAGUAAAAAAAUAAGAUUACUCUAUAUUUCACUCUAUUAUAGAAUAACUGAGUUAUUAUAGAGUGAACAAUUGGAGCAAAUUCAACUCUAUAAUAGAGUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013785684.1	ncRNA:24   CGUUUAGGUUGAGAUAU-UAUCUUA   1   *|*||||||||||||||-||||||| targets:2820   UCCAAUCCAACUCUAUAUAUAGAAU   2844 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106346374 (LOC106346374), transcript variant X5, mRNA	uncharacterized LOC106346374(LOC106346374)	coding protein	psRNATarget
XM_013785681.1	ncRNA:24   CGUUUAGGUUGAGAUAU-UAUCUUA   1   *|*||||||||||||||-||||||| targets:3442   UCCAAUCCAACUCUAUAUAUAGAAU   3466 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106346374 (LOC106346374), transcript variant X2, mRNA	uncharacterized LOC106346374(LOC106346374)	coding protein	psRNATarget
XM_013785680.1	ncRNA:24   CGUUUAGGUUGAGAUAU-UAUCUUA   1   *|*||||||||||||||-||||||| targets:3474   UCCAAUCCAACUCUAUAUAUAGAAU   3498 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106346374 (LOC106346374), transcript variant X1, mRNA	uncharacterized LOC106346374(LOC106346374)	coding protein	psRNATarget
XM_013785683.1	ncRNA:24   CGUUUAGGUUGAGAUAU-UAUCUUA   1   *|*||||||||||||||-||||||| targets:3693   UCCAAUCCAACUCUAUAUAUAGAAU   3717 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106346374 (LOC106346374), transcript variant X4, mRNA	uncharacterized LOC106346374(LOC106346374)	coding protein	psRNATarget