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BaseInfo

ncRNA ID	novel_bna_miR439
Species	Brassica napus
Class	miRNA
Genome position	ChrA2:15173552-15173628 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537600
Length	22
Mature sequence(if miRNA)	56 - CUGAAGUGUUUGGGGGAACUCC - 77
Stem-loop(if miRNA)	--                   U     AAAAAU     GC   AGUUCCUCUAAGCACUUCA UGGAG      CAUUU  U   ||||||||||||||||||| |||||      |||||  A   UCAAGGGGGUUUGUGAAGU ACCUU      GUAAA  U CC                   C     ----AU     AG
Stem-loop sequence	AGUUCCUCUAAGCACUUCAUUGGAGAAAAAUCAUUUGCUAUGAAAAUGUAUUCCACUGAAGUGUUUGGGGGAACUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001315829.1	ncRNA:22   CCUCAAGGGGGUUUGUGAAGUC   1   *|||||||=||||||||||||* targets:337   AGAGUUCCUCCAAACACUUCAU   358 Target Full Sequence	2.0	Brassica napus ATP sulfurylase 4, chloroplastic (LOC106410303), mRNA	ATP sulfurylase 4, chloroplastic(LOC106410303)	coding protein	psRNATarget
FJ626850.1	ncRNA:22   CCUCAAGGGGGUUUGUGAAGUC   1   *|||||||=||||||||||||* targets:337   AGAGUUCCUCCAAACACUUCAU   358 Target Full Sequence	2.0	Brassica napus ATP sulfurylase 4 mRNA, complete cds	NA	coding protein	psRNATarget
XM_013888737.1	ncRNA:22   CCUCAAGGGGGUUUGUGAAGUC   1   *||||*||=||||||||||||| targets:1094   UGAGUGCCUCCAAACACUUCAG   1115 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106446918 (LOC106446918), mRNA	uncharacterized LOC106446918(LOC106446918)	coding protein	psRNATarget
FJ471539.1	ncRNA:22   CCUCAAGGGGGUUUGUGAAGUC   1   **|||||=|||||||||||||* targets:106   CAAGUUCUCCCAAACACUUCAA   127 Target Full Sequence	2.0	Brassica napus low affinity sulfate transporter Bnst2-1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001315588.1	ncRNA:22   CCUCAAGGGGGUUUGUGAAGUC   1   **|||||=|||||||||||||* targets:106   CAAGUUCUCCCAAACACUUCAA   127 Target Full Sequence	2.0	Brassica napus sulfate transporter 2.1 (LOC106383119), mRNA	sulfate transporter 2.1(LOC106383119)	coding protein	psRNATarget
XM_013859223.1	ncRNA:22   CCUCAAGGGGGUUUGUGAAGUC   1   **|||||=|||||||||||||* targets:108   CAAGUUCUCCCAAACACUUCAA   129 Target Full Sequence	2.0	PREDICTED: Brassica napus sulfate transporter 2.1-like (LOC106418501), mRNA	sulfate transporter 2.1-like(LOC106418501)	coding protein	psRNATarget
XM_013812709.1	ncRNA:22   CCUCAAGGGGGUUUGUGAAGUC   1   **|||||=|||||||||||||* targets:128   CAAGUUCUCCCAAACACUUCAA   149 Target Full Sequence	2.0	PREDICTED: Brassica napus sulfate transporter 2.1-like (LOC106372486), mRNA	sulfate transporter 2.1-like(LOC106372486)	coding protein	psRNATarget