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BaseInfo

ncRNA ID novel_bna_miR437
Species Brassica napus
Class miRNA
Genome position ChrA2:10176203-10176316 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537600;SRR537604;SRR537612;SRR537857;SRR538067
Length 21
Mature sequence(if miRNA) 94 - AGCGGAAUAUAAGAACAUGUC - 114
Stem-loop(if miRNA) --               CA     C   CC        U        UUUU   UAA
  AGCGGAAUAUAAGAA  UGUCU UUA  UUUUAACU AAAAAGCU    AUU   A
  |||||||||||||||  ||||| |||  |||||||| ||||||||    |||
  UCGUUUUAUAUUUUU  GCAGA AAU  AAAAUUGA UUUUUCGA    UGG   A
CA               AG     A   UU        U        UUCU   CCG
Stem-loop sequence AGCGGAAUAUAAGAACAUGUCUCUUACCUUUUAACUUAAAAAGCUUUUUAUUUAAAAGCCGGUUCUUAGCUUUUUUAGUUAAAAUUUAAAAGACGGAUUUUUAUAUUUUGCUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013810588.1
ncRNA:21   CUGUACAAGAAUAUAAGGCGA   1
  |||=*|||||||||||||||*
targets:1251   GACGAGUUCUUAUAUUCCGCC   1271

3.0 PREDICTED: Brassica napus putative auxin efflux carrier component 8 (LOC106370582), mRNA putative auxin efflux carrier component 8(LOC106370582) coding protein psRNATarget