ncRNA ID | novel_bna_miR410 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrC4:56375616-56375787 [+] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR537600;SRR537604;SRR537609;SRR537612;SRR537633;SRR537857;SRR538066 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UGAAAAUGCUCCAAUGUAUGCAUC - 24 |
Stem-loop(if miRNA) |
--                 A   A     A   A    C        A              A  AUAU A     -CUA      A   UGAAAAUGCUCCAAUGU UGC UCUGU AUA AGUU CUCUAUUU UAGGGGAAAAUAUA AG    G UAUUU    CCUCUA A   ||||||||||||||||| ||| ||||| ||| |||| |||||||| |||||||||||||| ||    | |||||    ||||||   ACUUUUACGAGGUUACA ACG AGAUA UAU UCAA GAGAUAAA AUCUCCUUUUAUAU UC    C AUGAA    GGAGAU U CG                 A   G     C   C    A        -              C  AUUU A     AAAC      A |
Stem-loop sequence | UGAAAAUGCUCCAAUGUAUGCAUCUGUAAUAAAGUUCCUCUAUUUAUAGGGGAAAAUAUAAAGAUAUGAUAUUUCUACCUCUAAAUAUAGAGGCAAAAAGUAACUUUACUCUAUAUUUUCCUCUAAAAUAGAGAAACUCUAUCAUAGAGGCAAACAUUGGAGCAUUUUCAGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013804456.1 |
|
1.5 | PREDICTED: Brassica napus expansin-A23-like (LOC106364991), mRNA | expansin-A23-like(LOC106364991) | coding protein | psRNATarget |