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BaseInfo

ncRNA ID novel_bna_miR410
Species Brassica napus
Class miRNA
Genome position ChrC4:56375616-56375787 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537600;SRR537604;SRR537609;SRR537612;SRR537633;SRR537857;SRR538066
Length 24
Mature sequence(if miRNA) 1 - UGAAAAUGCUCCAAUGUAUGCAUC - 24
Stem-loop(if miRNA) --                 A   A     A   A    C        A              A  AUAU A     -CUA      A
  UGAAAAUGCUCCAAUGU UGC UCUGU AUA AGUU CUCUAUUU UAGGGGAAAAUAUA AG    G UAUUU    CCUCUA A
  ||||||||||||||||| ||| ||||| ||| |||| |||||||| |||||||||||||| ||    | |||||    ||||||
  ACUUUUACGAGGUUACA ACG AGAUA UAU UCAA GAGAUAAA AUCUCCUUUUAUAU UC    C AUGAA    GGAGAU U
CG                 A   G     C   C    A        -              C  AUUU A     AAAC      A
Stem-loop sequence UGAAAAUGCUCCAAUGUAUGCAUCUGUAAUAAAGUUCCUCUAUUUAUAGGGGAAAAUAUAAAGAUAUGAUAUUUCUACCUCUAAAUAUAGAGGCAAAAAGUAACUUUACUCUAUAUUUUCCUCUAAAAUAGAGAAACUCUAUCAUAGAGGCAAACAUUGGAGCAUUUUCAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013804456.1
ncRNA:24   CUACGUAUGUAACCUCGUAAAAGU   1
  ||**=|||||||||||||*|||||
targets:4   GAAAUAUACAUUGGAGCAAUUUCA   27

1.5 PREDICTED: Brassica napus expansin-A23-like (LOC106364991), mRNA expansin-A23-like(LOC106364991) coding protein psRNATarget