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BaseInfo

ncRNA ID	novel_bna_miR408
Species	Brassica napus
Class	miRNA
Genome position	ChrC3:35016538-35016709 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537600;SRR537612
Length	24
Mature sequence(if miRNA)	1 - UGGAUUUGCUCCAAUGGUUCAAUC - 24
Stem-loop(if miRNA)	--                    AA                   C                                  C      U   UGGAUUUGCUCCAAUGGUUC  UCUAUAAUAGAGUUACUCU UAAUAGAGUGAAAUAUAGAGUAUUUUUGUUUUUU ACUCUA A   ||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||   ACUUAAACGAGGUUACCAAG  AGAUAUUAUCUCAAUGAGA AUUAUCUCACUUUAUAUCUCAUAAGAACAAAAAA UGAGGU U CA                    GG                   U                                  A      U
Stem-loop sequence	UGGAUUUGCUCCAAUGGUUCAAUCUAUAAUAGAGUUACUCUCUAAUAGAGUGAAAUAUAGAGUAUUUUUGUUUUUUCACUCUAUAUUUGGAGUAAAAAAACAAGAAUACUCUAUAUUUCACUCUAUUAUAGAGUAACUCUAUUAUAGAGGGAACCAUUGGAGCAAAUUCAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013810501.1	ncRNA:24   CUAA--CUUGGUAACCUCGUUUAGGU   1   ||||--||||**|||||||||||||| targets:362   GAUUUAGAACGUUUGGAGCAAAUCCA   387 Target Full Sequence	2.0	PREDICTED: Brassica napus histone acetyltransferase MCC1-like (LOC106370501), mRNA	histone acetyltransferase MCC1-like(LOC106370501)	coding protein	psRNATarget
XM_013810508.1	ncRNA:24   CUAA--CUUGGUAACCUCGUUUAGGU   1   ||||--||||**|||||||||||||| targets:362   GAUUUAGAACGUUUGGAGCAAAUCCA   387 Target Full Sequence	2.0	PREDICTED: Brassica napus histone acetyltransferase MCC1-like (LOC106370508), mRNA	histone acetyltransferase MCC1-like(LOC106370508)	coding protein	psRNATarget
XM_013873955.1	ncRNA:24   CUA--ACUUGGUAACCUCGUUUAGGU   1   |||--|||*=|||||||||||||||= targets:466   GAUCCUGACUCAUUGGAGCAAAUCCG   491 Target Full Sequence	3.0	PREDICTED: Brassica napus ACT domain-containing protein ACR12 (LOC106433112), mRNA	ACT domain-containing protein ACR12(LOC106433112)	coding protein	psRNATarget