ncRNA ID | novel_bna_miR406 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrC3:8476367-8476538 [+] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR537600;SRR537604;SRR537609;SRR537612;SRR538067 |
Length | 27 |
Mature sequence(if miRNA) | 146 - AGAGGCAUACAUUAGAACAUUUUCAUC - 172 |
Stem-loop(if miRNA) |
--        C  C       A   G            C        -   AG             AAA    C            U   UGAAAAUG UC AAUGUAU CCU UAUAAUAGAGUU CUCUAUUU UAG  GAAAAUAUAGAGG   GAUA UUUUUGCCUCUA A   |||||||| || ||||||| ||| |||||||||||| |||||||| |||  |||||||||||||   |||| ||||||||||||   ACUUUUAC AG UUACAUA GGA AUAUUAUCUCAA GAGAUAAA AUC  CUUUUAUAUCUCU   CUAU AAAGAUGGAGAU U CU        A  A       C   G            A        U   CU             AUA    -            U |
Stem-loop sequence | UGAAAAUGCUCCAAUGUAUACCUGUAUAAUAGAGUUCCUCUAUUUUAGAGGAAAAUAUAGAGGAAAGAUACUUUUUGCCUCUAUAUUUAGAGGUAGAAAUAUCAUAUCUCUAUAUUUUCUCCUAUAAAUAGAGAAACUCUAUUAUAGAGGCAUACAUUAGAACAUUUUCAUC |