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BaseInfo

ncRNA ID novel_bna_miR406
Species Brassica napus
Class miRNA
Genome position ChrC3:8476367-8476538 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR537600;SRR537604;SRR537609;SRR537612;SRR538067
Length 27
Mature sequence(if miRNA) 146 - AGAGGCAUACAUUAGAACAUUUUCAUC - 172
Stem-loop(if miRNA) --        C  C       A   G            C        -   AG             AAA    C            U
  UGAAAAUG UC AAUGUAU CCU UAUAAUAGAGUU CUCUAUUU UAG  GAAAAUAUAGAGG   GAUA UUUUUGCCUCUA A
  |||||||| || ||||||| ||| |||||||||||| |||||||| |||  |||||||||||||   |||| ||||||||||||
  ACUUUUAC AG UUACAUA GGA AUAUUAUCUCAA GAGAUAAA AUC  CUUUUAUAUCUCU   CUAU AAAGAUGGAGAU U
CU        A  A       C   G            A        U   CU             AUA    -            U
Stem-loop sequence UGAAAAUGCUCCAAUGUAUACCUGUAUAAUAGAGUUCCUCUAUUUUAGAGGAAAAUAUAGAGGAAAGAUACUUUUUGCCUCUAUAUUUAGAGGUAGAAAUAUCAUAUCUCUAUAUUUUCUCCUAUAAAUAGAGAAACUCUAUUAUAGAGGCAUACAUUAGAACAUUUUCAUC