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BaseInfo

ncRNA ID	novel_bna_miR404
Species	Brassica napus
Class	miRNA
Genome position	ChrA1:23201310-23201525 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537600;SRR537606;SRR537609;SRR537633;SRR538151
Length	23
Mature sequence(if miRNA)	1 - UUUAGGAUUUAGGGUUUAGGAUC - 23
Stem-loop(if miRNA)	--C                                          C                      -------   G            C                 UUU    CCUAAACCCUAAAUCCUAAACCUAAACUCUAAACCCUAAAUC AAACCGUAAACCCUAAACCCAA       ACC UAAACCCAAACU UAGAUCUUAAACUCUAG   U    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       ||| |||||||||||| |||||||||||||||||    GGAUUUGGGAUUUAGGAUUUGGGUUUGGGAUUUGGGAUUUAG UUUGGCAUUUGGGAUUUGGGUU       UGG AUUUGGGUUUGA AUCUAGAAUUUGGGAUU   G CUA                                          -                      UAGCAUU   G            A                 UGG
Stem-loop sequence	CCCUAAACCCUAAAUCCUAAACCUAAACUCUAAACCCUAAAUCCAAACCGUAAACCCUAAACCCAAACCGUAAACCCAAACUCUAGAUCUUAAACUCUAGUUUUGGGUUUAGGGUUUAAGAUCUAAAGUUUGGGUUUAGGGUUUACGAUUUGGGUUUAGGGUUUACGGUUUGAUUUAGGGUUUAGGGUUUGGGUUUAGGAUUUAGGGUUUAGGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013894557.1	ncRNA:23   CUAGGAUUUGGGAUUUAGGAUUU   1   **|=*|||||||||||||||||| targets:85   CUUUGUAAACCCUAAAUCCUAAA   107 Target Full Sequence	1.0	PREDICTED: Brassica napus probable pectate lyase 12 (LOC106452444), mRNA	probable pectate lyase 12(LOC106452444)	coding protein	psRNATarget
XM_013796424.1	ncRNA:23   CUAGGAUUUGGGAUUUAGGAUUU   1   *|***|||||||||||||||||| targets:92   AAGAGUAAACCCUAAAUCCUAAA   114 Target Full Sequence	1.0	PREDICTED: Brassica napus probable pectate lyase 12 (LOC106356689), mRNA	probable pectate lyase 12(LOC106356689)	coding protein	psRNATarget
XM_013804630.1	ncRNA:23   CUAGGAUUUGGGAUUUAGGAUUU   1   *|*|=*||||||||||||||||| targets:37   CAACUCAAACCCUAAAUCCUAAA   59 Target Full Sequence	2.0	PREDICTED: Brassica napus extensin-like (LOC106365181), mRNA	extensin-like(LOC106365181)	coding protein	psRNATarget
XM_013833352.1	ncRNA:23   CUAGGAUUUGGGAUUUAGGAUUU   1   *|||*|||||||||||*|||||| targets:234   AAUCGUAAACCCUAAACCCUAAA   256 Target Full Sequence	2.5	PREDICTED: Brassica napus protein RALF-like 9 (LOC106392544), mRNA	protein RALF-like 9(LOC106392544)	coding protein	psRNATarget