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BaseInfo

ncRNA ID	novel_bna_miR396
Species	Brassica napus
Class	miRNA
Genome position	ChrC2:29224598-29224775 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR537600;SRR537612;SRR538067;SRR538253
Length	24
Mature sequence(if miRNA)	1 - UGGACGACUUAUAAUUCAGUCAUC - 24
Stem-loop(if miRNA)	--A    U    UA           GG A  -     UCGU    --       -      ----GUCG     GCCUCGUUAACCAAAAAAAA    GACU AAUU  AAGUCGUCCGG  A AG CAAAG    CCAU  AAUUUUA CUUUUC        UAAGG                    A    |||| ||||  |||||||||||  | || |||||    ||||  ||||||| ||||||        |||||                    U    CUGA UUAA  UUCAGCAGGUC  U UC GUUUC    GGUG  UUAAAAU GAAGAG        AUUUC                    U CUA    C    UA           UU A  A     ---U    AC       U      AAAAAAAA     AAAUAUACUUCAACUUUUAA
Stem-loop sequence	AGACUUAAUUUAAAGUCGUCCGGGGAAAGCAAAGUCGUCCAUAAUUUUACUUUUCGUCGUAAGGGCCUCGUUAACCAAAAAAAAAUUAAUUUUCAACUUCAUAUAAACUUUAAAAAAAAAGAGAAGUUAAAAUUCAGUGGUCUUUGACUAUUUCUGGACGACUUAUAAUUCAGUCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013846960.1	ncRNA:24   CUACUGACUUAAUAUUCAGCAGGU   1   |=|*|||*|=*||||||||||||| targets:948   GGUCACUUAGAUAUAAGUCGUCCA   971 Target Full Sequence	3.0	PREDICTED: Brassica napus probable E3 ubiquitin-protein ligase HERC3 (LOC106406329), mRNA	probable E3 ubiquitin-protein ligase HERC3(LOC106406329)	coding protein	psRNATarget
XM_013846684.1	ncRNA:24   CUACUGACUUAAUAUUCAGCAGGU   1   |=|*|||*|=*||||||||||||| targets:1098   GGUCACUUAGAUAUAAGUCGUCCA   1121 Target Full Sequence	3.0	PREDICTED: Brassica napus probable E3 ubiquitin-protein ligase HERC3 (LOC106406096), transcript variant X1, mRNA	probable E3 ubiquitin-protein ligase HERC3(LOC106406096)	coding protein	psRNATarget
XM_013846685.1	ncRNA:24   CUACUGACUUAAUAUUCAGCAGGU   1   |=|*|||*|=*||||||||||||| targets:1198   GGUCACUUAGAUAUAAGUCGUCCA   1221 Target Full Sequence	3.0	PREDICTED: Brassica napus probable E3 ubiquitin-protein ligase HERC3 (LOC106406096), transcript variant X2, mRNA	probable E3 ubiquitin-protein ligase HERC3(LOC106406096)	coding protein	psRNATarget