ncRNA ID | novel_bna_miR387 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrC1:11954072-11954243 [-] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR537600 |
Length | 21 |
Mature sequence(if miRNA) | 1 - AUACAUUGGAGCAUUUUCAGC - 21 |
Stem-loop(if miRNA) |
--                                 A           A                 AUAUGA     -CUA      A   UGAAAAUGCUCCAAUGUAUGUCUCUAUAAUAGA UUCUUCUAUUU UAGGGGAAAAUAUAGAG      UAUUU    CCUCUA A   ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||      |||||    ||||||   ACUUUUACGAGGUUACAUACGGAGAUAUUAUCU AAGGAGAUAAA AUCUCCUUUUAUAUCUC      AUAAA    GGAGAU U CG                                 C           -                 CUUUUA     AAAC      A |
Stem-loop sequence | UGAAAAUGCUCCAAUGUAUGUCUCUAUAAUAGAAUUCUUCUAUUUAUAGGGGAAAAUAUAGAGAUAUGAUAUUUCUACCUCUAAAUAUAGAGGCAAAAAAUAAUUUUCCUCUAUAUUUUCCUCUAAAAUAGAGGAACUCUAUUAUAGAGGCAUACAUUGGAGCAUUUUCAGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013883548.1 |
|
2.5 | PREDICTED: Brassica napus receptor-like protein 12 (LOC106441781), mRNA | receptor-like protein 12(LOC106441781) | coding protein | psRNATarget |