ncRNA ID | novel_bna_miR372 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrA6:8596346-8596478 [-] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR537600;SRR537604;SRR537605;SRR537609;SRR537657;SRR537857;SRR538067 |
Length | 23 |
Mature sequence(if miRNA) | 111 - AGCGGAAUAUAAGAACAUGUCUC - 133 |
Stem-loop(if miRNA) |
--                A                                    G        CA   AGCGGAAUAUAAGAAC UGUCUCUUAACUUUUAACUAAAAAAACUAAGAACCG CUCUUAAA  A   |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||  G   UCGCCUUAUAUUCUUG GCAGAGAAUUGAAAAUUGAUUUUUUUGAUUCUUGGC GAGAAUUU  A AA                G                                    A        UG |
Stem-loop sequence | AGCGGAAUAUAAGAACAUGUCUCUUAACUUUUAACUAAAAAAACUAAGAACCGGCUCUUAAACAAGAGUUUUAAGAGACGGUUCUUAGUUUUUUUAGUUAAAAGUUAAGAGACGGGUUCUUAUAUUCCGCUAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013810588.1 |
|
3.0 | PREDICTED: Brassica napus putative auxin efflux carrier component 8 (LOC106370582), mRNA | putative auxin efflux carrier component 8(LOC106370582) | coding protein | psRNATarget |