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BaseInfo

ncRNA ID ath-miRf10582-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - CCUCGCAAACUUUGCGAGGGA - NA
Stem-loop(if miRNA) GGUC    U           A           A   -AU U UC   --AAC  CUUGCAAUUUGCAAGGGAA
    GUAA UCUCUCGCAAA UUUGCGAGGAA UAG   G C  GCU     CU                   A
    |||| ||||||||||| ||||||||||| |||   | |  |||     ||
    CGUU AGGGAGCGUUU AAACGCUCCUU AUC   C G  CGA     CG                   U
CUAA    U           C           A   CCU U -U   GUAAA  CCACUUAAACGCUGCAAAA
Stem-loop sequence GGUCGUAAUUCUCUCGCAAAAUUUGCGAGGAAAUAGAUGUCUCGCUAACCUCUUGCAAUUUGCAAGGGAAAUAAAACGUCGCAAAUUCACCGCAAAUGAGCUGUCUCCCUAAUUCCUCGCAAACUUUGCGAGGGAUUUGCAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK230032.1
ncRNA:21   AGGGAGCGUUUCAAACGCUCC   1
  |||*|*|||||||||||||||
targets:1383   UCCGUAGCAAAGUUUGCGAGG   1403

2.0 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-57-N05 NA coding protein psRNATarget
AK230032.1
ncRNA:21   AGGG--AGCGUUUCAAACGCUCC   1
  |=||--|||||||||||||||||
targets:312   UUCCGAUCGCAAAGUUUGCGAGG   334

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-57-N05 NA coding protein psRNATarget
NM_115111.5
ncRNA:21   AGGGAGCGUUUCAAACGCUCC   1
  |*|=||||||||||||*||||
targets:77   UGCUUCGCAAAGUUUGGGAGG   97

2.5 Arabidopsis thaliana F-box associated ubiquitination effector family protein partial mRNA F-box associated ubiquitination effector family protein(AT3G52510) coding protein psRNATarget
NM_001339575.1
ncRNA:21   AGGGAGCGUUUCAAACGCUCC   1
  |*|=||||||||||||*||||
targets:261   UGCUUCGCAAAGUUUGGGAGG   281

2.5 Arabidopsis thaliana F-box associated ubiquitination effector family protein partial mRNA F-box associated ubiquitination effector family protein(AT3G52510) coding protein psRNATarget