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BaseInfo

ncRNA ID novel_bna_miR360
Species Brassica napus
Class miRNA
Genome position ChrA3:45511589-45511693 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527236
Length 20
Mature sequence(if miRNA) 86 - GGCAGUCUCUUUGGCUAUUC - 105
Stem-loop(if miRNA) --           U    U     -  U  UGAA   UAUCUA         UGAUC
  GUAGCCAAGGA GACU GCCUG CG CU    CCA      UCAGAGACU     A
  ||||||||||| |||| ||||| || ||    |||      |||||||||
  UAUCGGUUUCU CUGA CGGAU GC GA    GGU      AGUCUCUGA     A
CU           -    -     U  U  --UC   ----UG         CGUAC
Stem-loop sequence GUAGCCAAGGAUGACUUGCCUGCGUCUUGAACCAUAUCUAUCAGAGACUUGAUCAACAUGCAGUCUCUGAGUUGGCUAGUCGUUAGGCAGUCUCUUUGGCUAUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013831023.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=||*||||||||||||
targets:1063   CAAUGGCGAAAGAGACUGCC   1082

2.5 PREDICTED: Brassica napus putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial (LOC106390532), mRNA putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial(LOC106390532) coding protein psRNATarget
XM_013887330.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1625   CAAUGCUCAAAGAGACUGCC   1644

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106445717), transcript variant X6, mRNA TSK-associating protein 1-like(LOC106445717) coding protein psRNATarget
XM_013887331.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1625   CAAUGCUCAAAGAGACUGCC   1644

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106445717), transcript variant X7, mRNA TSK-associating protein 1-like(LOC106445717) coding protein psRNATarget
XM_013846802.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1628   CAAUGCUCAAAGAGACUGCC   1647

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106406183), transcript variant X6, mRNA TSK-associating protein 1-like(LOC106406183) coding protein psRNATarget
XM_013887326.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1743   CAAUGCUCAAAGAGACUGCC   1762

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106445717), transcript variant X3, mRNA TSK-associating protein 1-like(LOC106445717) coding protein psRNATarget
XM_013887328.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1743   CAAUGCUCAAAGAGACUGCC   1762

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106445717), transcript variant X4, mRNA TSK-associating protein 1-like(LOC106445717) coding protein psRNATarget
XM_013887329.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1744   CAAUGCUCAAAGAGACUGCC   1763

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106445717), transcript variant X5, mRNA TSK-associating protein 1-like(LOC106445717) coding protein psRNATarget
XM_013846801.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1745   CAAUGCUCAAAGAGACUGCC   1764

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106406183), transcript variant X5, mRNA TSK-associating protein 1-like(LOC106406183) coding protein psRNATarget
XM_013846800.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1745   CAAUGCUCAAAGAGACUGCC   1764

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106406183), transcript variant X4, mRNA TSK-associating protein 1-like(LOC106406183) coding protein psRNATarget
XM_013846799.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1811   CAAUGCUCAAAGAGACUGCC   1830

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106406183), transcript variant X3, mRNA TSK-associating protein 1-like(LOC106406183) coding protein psRNATarget
XM_013887324.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1861   CAAUGCUCAAAGAGACUGCC   1880

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106445717), transcript variant X1, mRNA TSK-associating protein 1-like(LOC106445717) coding protein psRNATarget
XM_013887325.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1862   CAAUGCUCAAAGAGACUGCC   1881

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106445717), transcript variant X2, mRNA TSK-associating protein 1-like(LOC106445717) coding protein psRNATarget
XM_013846798.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1862   CAAUGCUCAAAGAGACUGCC   1881

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106406183), transcript variant X2, mRNA TSK-associating protein 1-like(LOC106406183) coding protein psRNATarget
XM_013846797.1
ncRNA:20   CUUAUCGGUUUCUCUGACGG   1
  *|||=*=|||||||||||||
targets:1862   CAAUGCUCAAAGAGACUGCC   1881

3.0 PREDICTED: Brassica napus TSK-associating protein 1-like (LOC106406183), transcript variant X1, mRNA TSK-associating protein 1-like(LOC106406183) coding protein psRNATarget
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