A ncRNA database for oil producing plants

Search result

BaseInfo

ncRNA ID	novel_bna_miR332
Species	Brassica napus
Class	miRNA
Genome position	ChrA1:41228079-41228181 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527236
Length	20
Mature sequence(if miRNA)	84 - AGCCAAGGAUGACUUGCCGG - 103
Stem-loop(if miRNA)	-- A UUUAUAU - C UUCAUGAACCAUUGUUUU AGCCAAGG UGACUUGCCGG AC AAU GG G \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\| UCGGUUCC GUUGAACGGUC UG GUU GG G UC A ------- U - UUUCCCGACUCAUACACU
Stem-loop sequence	AGCCAAGGAUGACUUGCCGGUUUAUAUACAAUCGGUUCAUGAACCAUUGUUUUGGUCACAUACUCAGCCCUUUGGUUGUGUCUGGCAAGUUGACCUUGGCUCU

Targets Info

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

XM_013817827.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1123	ACGGGAAGUCAUCCUUGGCU	1142

1.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X3, mRNA

nuclear transcription factor Y subunit A-6(LOC106377560)

coding protein

psRNATarget

XM_013817826.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1127	ACGGGAAGUCAUCCUUGGCU	1146

1.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X2, mRNA

nuclear transcription factor Y subunit A-6(LOC106377560)

coding protein

psRNATarget

XM_013817825.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1148	ACGGGAAGUCAUCCUUGGCU	1167

1.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X1, mRNA

nuclear transcription factor Y subunit A-6(LOC106377560)

coding protein

psRNATarget

XM_013817829.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1336	ACGGGAAGUCAUCCUUGGCU	1355

1.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X5, mRNA

nuclear transcription factor Y subunit A-6(LOC106377560)

coding protein

psRNATarget

XM_013817828.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1340	ACGGGAAGUCAUCCUUGGCU	1359

1.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X4, mRNA

nuclear transcription factor Y subunit A-6(LOC106377560)

coding protein

psRNATarget

XM_013817830.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1378	ACGGGAAGUCAUCCUUGGCU	1397

1.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X6, mRNA

nuclear transcription factor Y subunit A-6(LOC106377560)

coding protein

psRNATarget

XM_013788201.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	\|=\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1058	CUGGGAAGUCAUCCUUGGCU	1077

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106348456), transcript variant X2, mRNA

nuclear transcription factor Y subunit A-5-like(LOC106348456)

coding protein

psRNATarget

XM_013788200.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	\|=\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1105	CUGGGAAGUCAUCCUUGGCU	1124

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106348456), transcript variant X1, mRNA

nuclear transcription factor Y subunit A-5-like(LOC106348456)

coding protein

psRNATarget

XM_013846894.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1276	AGGGGAAGUCAUCCUUGGCU	1295

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106406270), mRNA

nuclear transcription factor Y subunit A-3-like(LOC106406270)

coding protein

psRNATarget

XM_013843696.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1280	AGGGGAAGUCAUCCUUGGCU	1299

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106402883), transcript variant X2, mRNA

nuclear transcription factor Y subunit A-3-like(LOC106402883)

coding protein

psRNATarget

XM_013840111.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1288	GGGGGAAGUCAUCCUUGGCU	1307

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106399653), mRNA

nuclear transcription factor Y subunit A-3-like(LOC106399653)

coding protein

psRNATarget

XM_013837663.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1289	GGGGGAAGUCAUCCUUGGCU	1308

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106397102), mRNA

nuclear transcription factor Y subunit A-3-like(LOC106397102)

coding protein

psRNATarget

XM_013821179.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1276	GGGGGAAGUCAUCCUUGGCU	1295

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X5, mRNA

nuclear transcription factor Y subunit A-3-like(LOC106381285)

coding protein

psRNATarget

XM_013846895.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1223	AGGGGAAGUCAUCCUUGGCU	1242

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106406271), mRNA

nuclear transcription factor Y subunit A-3-like(LOC106406271)

coding protein

psRNATarget

XM_013821178.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1295	GGGGGAAGUCAUCCUUGGCU	1314

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X4, mRNA

nuclear transcription factor Y subunit A-3-like(LOC106381285)

coding protein

psRNATarget

XM_013843695.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1313	AGGGGAAGUCAUCCUUGGCU	1332

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106402883), transcript variant X1, mRNA

nuclear transcription factor Y subunit A-3-like(LOC106402883)

coding protein

psRNATarget

XM_013794135.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1314	AGGGGAAGUCAUCCUUGGCU	1333

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106354243), mRNA

nuclear transcription factor Y subunit A-3-like(LOC106354243)

coding protein

psRNATarget

XM_013843873.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1377	AGGGGAAGUCAUCCUUGGCU	1396

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106403032), transcript variant X2, mRNA

nuclear transcription factor Y subunit A-3-like(LOC106403032)

coding protein

psRNATarget

XM_013843872.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1385	AGGGGAAGUCAUCCUUGGCU	1404

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106403032), transcript variant X1, mRNA

nuclear transcription factor Y subunit A-3-like(LOC106403032)

coding protein

psRNATarget

XM_013821177.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1390	GGGGGAAGUCAUCCUUGGCU	1409

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X3, mRNA

nuclear transcription factor Y subunit A-3-like(LOC106381285)

coding protein

psRNATarget

XM_013821176.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1402	GGGGGAAGUCAUCCUUGGCU	1421

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X2, mRNA

nuclear transcription factor Y subunit A-3-like(LOC106381285)

coding protein

psRNATarget

XM_013821175.1

ncRNA:20	GGCCGUUCAGUAGGAACCGA	1
	*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1610	GGGGGAAGUCAUCCUUGGCU	1629

2.0

PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X1, mRNA

nuclear transcription factor Y subunit A-3-like(LOC106381285)

coding protein

psRNATarget