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BaseInfo

ncRNA ID novel_bna_miR329
Species Brassica napus
Class miRNA
Genome position ChrC3:21712174-21712258 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527236
Length 21
Mature sequence(if miRNA) 65 - ACAAAGUUUUAUACUGAUAAU - 85
Stem-loop(if miRNA) --          U       A  UG  A    C      CUU
  UGUUAGUAUA AACUUUG UU  AU CAAA UGAUUA   A
  |||||||||| ||||||| ||  || |||| ||||||   U
  AUAGUCAUAU UUGAAAC AG  UA GUUU ACUAGU   U
UA          U       A  GU  C    C      UUU
Stem-loop sequence UGUUAGUAUAUAACUUUGAUUUGAUACAAACUGAUUACUUAUUUUUUGAUCACUUUGCAUUGGAACAAAGUUUUAUACUGAUAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013799540.1
ncRNA:21   UAAUAGUCAUAUUUUGAAACA   1
  =||||||*||||||||*||||
targets:1328   GUUAUCAUUAUAAAACGUUGU   1348

2.5 PREDICTED: Brassica napus zinc finger MYM-type protein 1-like (LOC106359914), mRNA zinc finger MYM-type protein 1-like(LOC106359914) coding protein psRNATarget
XM_013877706.1
ncRNA:21   UAAUAGUCAUAUUUUGAAACA   1
  =||*|||*||||||||||||*
targets:4781   GUUCUCACUAUAAAACUUUGC   4801

3.0 PREDICTED: Brassica napus uncharacterized LOC106436758 (LOC106436758), mRNA uncharacterized LOC106436758(LOC106436758) coding protein psRNATarget