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BaseInfo

ncRNA ID novel_bna_miR325
Species Brassica napus
Class miRNA
Genome position ChrC6:27508121-27508260 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 23
Mature sequence(if miRNA) 118 - CUUAAAGUGGAGUUCUUAGCGGA - 140
Stem-loop(if miRNA) --C        GA   C                 C                                  C
   UUAAAGUG  GUU UUAGCGGAAUAUAAGAA CCGUCUCUUAACUUUUAACUAAAAAAGCUAAGAA C
   ||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
   AAUUUCAC  CAA AAUUGCUUUAUAUUCUU GGCAGAGAAUUGAAAAUUGAUUUUUUCGAUUCUU G
AAA        UC   A                 A                                  G
Stem-loop sequence CUUAAAGUGGAGUUCUUAGCGGAAUAUAAGAACCCGUCUCUUAACUUUUAACUAAAAAAGCUAAGAACCGGUUCUUAGCUUUUUUAGUUAAAAGUUAAGAGACGGAUUCUUAUAUUUCGUUAAAAACCUCACUUUAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013832316.1
ncRNA:23   AGG---CGAUUCUUGAGGUGAAAUUC   1
  |=|---|||=|||||*||||||||||
targets:699   UUCAUGGCUGAGAACGCCACUUUAAG   724

2.5 PREDICTED: Brassica napus bZIP transcription factor 17-like (LOC106391630), mRNA bZIP transcription factor 17-like(LOC106391630) coding protein psRNATarget