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BaseInfo

ncRNA ID	novel_bna_miR315
Species	Brassica napus
Class	miRNA
Genome position	ChrA9:24582883-24582980 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527236;SRR527228;SRR527229
Length	21
Mature sequence(if miRNA)	1 - UGCCAAAGGAGAUUUGACCGG - 21
Stem-loop(if miRNA)	-G  CA        A       GA   -      UU     UU     CU   GG  AGAUCUCU UUGGCAG  AAC CAUUAC  AGAUC  UGCAU  C   ||  |||||||| |||||||  ||| ||||||  |||||  |||||   CC  UUUAGAGG AACCGUC  UUG GUGAUG  UUUAG  ACGUG  U GG  AG        A       UC   A      --     UU     UU
Stem-loop sequence	GGGCAAGAUCUCUAUUGGCAGGAAACCAUUACUUAGAUCUUUGCAUCUCUUUGUGCAUUGAUUUGUAGUGAGUUCUCUGCCAAAGGAGAUUUGACCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013863849.1	ncRNA:21   GGCCAGUUUAGAGGAAACCGU   1   =*||*|||||||||||||||| targets:420   UAGGGCAAAUCUCCUUUGGCA   440 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCAGUUUAGAGGAAACCGU   1   ==||*|||||||||||||||| targets:496   UUGGGCAAAUCUCCUUUGGCA   516 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCAGUUUAGAGGAAACCGU   1   =*||*||*||||||||||||| targets:514   UGGGGCAUAUCUCCUUUGGCA   534 Target Full Sequence	2.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCAGUUUAGAGGAAACCGU   1   =*||*||*||||||||||||| targets:591   UGGGGCAUAUCUCCUUUGGCA   611 Target Full Sequence	2.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCA-GUUUAGAGGAAACCGU   1   =|||*-|||||||||||||||| targets:656   UCGGAGCAAAUCUCCUUUGGCA   677 Target Full Sequence	3.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCAGUUUAGAGGAAACCGU   1   |*|**|||||||||||||||| targets:714   CAGAGCAAAUCUCCUUUGGCA   734 Target Full Sequence	3.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCA-GUUUAGAGGAAACCGU   1   =|||*-|||||||||||||||| targets:733   UCGGAGCAAAUCUCCUUUGGCA   754 Target Full Sequence	3.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCAGUUUAGAGGAAACCGU   1   |*|**|||||||||||||||| targets:791   CAGAGCAAAUCUCCUUUGGCA   811 Target Full Sequence	3.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013881093.1	ncRNA:21   GGCCAGUUUAGAGGAAACCGU   1   =||*|=|*||||||||||||| targets:957   UCGUUUAUAUCUCCUUUGGCA   977 Target Full Sequence	3.0	PREDICTED: Brassica napus UDP-glycosyltransferase 84A3-like (LOC106439609), mRNA	UDP-glycosyltransferase 84A3-like(LOC106439609)	coding protein	psRNATarget
XM_013881092.1	ncRNA:21   GGCCAGUUUAGAGGAAACCGU   1   =||*|=|*||||||||||||| targets:964   UCGUUUAUAUCUCCUUUGGCA   984 Target Full Sequence	3.0	PREDICTED: Brassica napus UDP-glycosyltransferase 84A3-like (LOC106439608), mRNA	UDP-glycosyltransferase 84A3-like(LOC106439608)	coding protein	psRNATarget