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BaseInfo

ncRNA ID	novel_bna_miR312
Species	Brassica napus
Class	miRNA
Genome position	ChrA1:22564369-22564442 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527236;SRR1363496;SRR521271
Length	21
Mature sequence(if miRNA)	54 - CGGCUCUGAUACCAAUUGAUG - 74
Stem-loop(if miRNA)	--             A    A   UAAUUAC      G   UCGAUUGGUGUCA AGCC UGC       UUCUCU U   ||||||||||||| |||| |||       ||||||   AGUUAACCAUAGU UCGG ACG       AGGGGA C GU             C    C   --UUUUA      A
Stem-loop sequence	UCGAUUGGUGUCAAAGCCAUGCUAAUUACUUCUCUGUCAAGGGGAAUUUUGCACGGCUCUGAUACCAAUUGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013828904.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   =|||||*|||||||||||||| targets:1667   UAUCAAAUGGUAUCAGAGCCG   1687 Target Full Sequence	1.0	PREDICTED: Brassica napus uncharacterized LOC106388763 (LOC106388763), mRNA	uncharacterized LOC106388763(LOC106388763)	coding protein	psRNATarget
XM_013799442.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   |*||||||||||||||||||* targets:435   CUUCAAUUGGUAUCAGAGCCA   455 Target Full Sequence	1.0	PREDICTED: Brassica napus uncharacterized LOC106359810 (LOC106359810), mRNA	uncharacterized LOC106359810(LOC106359810)	coding protein	psRNATarget
XM_013877235.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   =||||=||||||||||||||* targets:818   UAUCAGUUGGUAUCAGAGCCA   838 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106436279 (LOC106436279), mRNA	uncharacterized LOC106436279(LOC106436279)	coding protein	psRNATarget
XM_013835591.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   ||||||*||||||||||||*| targets:252   CAUCAAGUGGUAUCAGAGCAG   272 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106395061 (LOC106395061), mRNA	uncharacterized LOC106395061(LOC106395061)	coding protein	psRNATarget
XM_013835034.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   ||||||*||||||||||||*| targets:299   CAUCAAGUGGUAUCAGAGCAG   319 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106394425 (LOC106394425), transcript variant X6, mRNA	uncharacterized LOC106394425(LOC106394425)	coding protein	psRNATarget
XM_013835027.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   ||||||*||||||||||||*| targets:299   CAUCAAGUGGUAUCAGAGCAG   319 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106394425 (LOC106394425), transcript variant X5, mRNA	uncharacterized LOC106394425(LOC106394425)	coding protein	psRNATarget
XM_013835020.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   ||||||*||||||||||||*| targets:299   CAUCAAGUGGUAUCAGAGCAG   319 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106394425 (LOC106394425), transcript variant X4, mRNA	uncharacterized LOC106394425(LOC106394425)	coding protein	psRNATarget
XM_013834999.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   ||||||*||||||||||||*| targets:299   CAUCAAGUGGUAUCAGAGCAG   319 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106394425 (LOC106394425), transcript variant X1, mRNA	uncharacterized LOC106394425(LOC106394425)	coding protein	psRNATarget
XM_013835005.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   ||||||*||||||||||||*| targets:299   CAUCAAGUGGUAUCAGAGCAG   319 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106394425 (LOC106394425), transcript variant X2, mRNA	uncharacterized LOC106394425(LOC106394425)	coding protein	psRNATarget
XM_013835013.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   ||||||*||||||||||||*| targets:299   CAUCAAGUGGUAUCAGAGCAG   319 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106394425 (LOC106394425), transcript variant X3, mRNA	uncharacterized LOC106394425(LOC106394425)	coding protein	psRNATarget
XM_013786998.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   ||||||*||||||||||||*| targets:252   CAUCAAGUGGUAUCAGAGCAG   272 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106347464 (LOC106347464), mRNA	uncharacterized LOC106347464(LOC106347464)	coding protein	psRNATarget
XM_013806675.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   =*|||||||||||||*||||* targets:227   UUUCAAUUGGUAUCAAAGCCA   247 Target Full Sequence	2.5	PREDICTED: Brassica napus 60S ribosomal protein L22-3-like (LOC106366991), mRNA	60S ribosomal protein L22-3-like(LOC106366991)	coding protein	psRNATarget
XM_013824445.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   =*||||*||||||||||||*| targets:2   UUUCAAGUGGUAUCAGAGCGG   22 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106384487 (LOC106384487), mRNA	uncharacterized LOC106384487(LOC106384487)	coding protein	psRNATarget
XM_013862346.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   =*||||*||||||||||||*| targets:14   UUUCAAGUGGUAUCAGAGCGG   34 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106421506 (LOC106421506), mRNA	uncharacterized LOC106421506(LOC106421506)	coding protein	psRNATarget
XM_013845109.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   ||*||*||||||||||||||* targets:155   CAACAUUUGGUAUCAGAGCCA   175 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106404384 (LOC106404384), mRNA	uncharacterized LOC106404384(LOC106404384)	coding protein	psRNATarget