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BaseInfo

ncRNA ID	novel_bna_miR306
Species	Brassica napus
Class	miRNA
Genome position	ChrA1:17402969-17403138 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527236;SRR537600;SRR537602;SRR537604;SRR537633;SRR537857;SRR538151;SRR538225;SRR538253;SRR527229
Length	21
Mature sequence(if miRNA)	1 - AGAGCUUCCUUGAGUCCAUUC - 21
Stem-loop(if miRNA)	--A          G      UU      CU  G U   A       A    -   AC    C   C  AA  C      --A  AAA    GAGCUUCCUU AGUCCA  CAGAGG  GU A AUG UCCAAUU GUUU CCG  UCAU CAU CA  UA CGAGUU   CU   U    |||||||||| ||||||  ||||||  || | ||| ||||||| |||| |||  |||| ||| ||  || ||||||   ||    CUCGAGGGAA UCAGGU  GUUUCU  UA U UAC AGGUUAA CAGA GGC  AGUA GUA GU  AU GCUCAG   GA   U UCC          G      UG      CU  G -   A       A    U   GU    A   A  AA  U      AUA  AUU
Stem-loop sequence	AGAGCUUCCUUGAGUCCAUUCAGAGGCUGUGAUAUGAUCCAAUUAGUUUCCGACUCAUCCAUCCAAAUACCGAGUUACUAAAUUUUAAGAUAGACUCGUUAAAUGAAUGAAUGAUGCGGUAGACAAAUUGGAACAUUGAUUCUCUUUGGUUGGACUGAAGGGAGCUCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013836053.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *=|||*=|||||||||||||| targets:1383   AGAUGAGCUCAAGGAAGCUCU   1403 Target Full Sequence	2.0	PREDICTED: Brassica napus calcium-dependent protein kinase 24-like (LOC106395661), mRNA	calcium-dependent protein kinase 24-like(LOC106395661)	coding protein	psRNATarget
XM_013888863.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *=|||*=|||||||||||||| targets:1383   AGAUGAGCUCAAGGAAGCUCU   1403 Target Full Sequence	2.0	PREDICTED: Brassica napus calcium-dependent protein kinase 24-like (LOC106447016), mRNA	calcium-dependent protein kinase 24-like(LOC106447016)	coding protein	psRNATarget
XM_013858742.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *=|||*=|||||||||||||| targets:1499   AGAUGAGCUCAAGGAAGCUCU   1519 Target Full Sequence	2.0	PREDICTED: Brassica napus calcium-dependent protein kinase 24-like (LOC106418063), mRNA	calcium-dependent protein kinase 24-like(LOC106418063)	coding protein	psRNATarget
XM_013890152.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   |=|||*==||||||||||||| targets:1341   GGAUGAGUUCAAGGAAGCUCU   1361 Target Full Sequence	3.0	PREDICTED: Brassica napus proline--tRNA ligase, cytoplasmic-like (LOC106448237), mRNA	proline--tRNA ligase, cytoplasmic-like(LOC106448237)	coding protein	psRNATarget
XM_013873158.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   |=|||*==||||||||||||| targets:1840   GGAUGAGUUCAAGGAAGCUCU   1860 Target Full Sequence	3.0	PREDICTED: Brassica napus proline--tRNA ligase, cytoplasmic-like (LOC106432319), mRNA	proline--tRNA ligase, cytoplasmic-like(LOC106432319)	coding protein	psRNATarget
XM_013844194.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *****|||||||||||||||| targets:604   CCUCAGACUCAAGGAAGCUCU   624 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106403354 (LOC106403354), mRNA	uncharacterized LOC106403354(LOC106403354)	coding protein	psRNATarget
XM_013851385.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *****|||||||||||||||| targets:52   CCUCAGACUCAAGGAAGCUCU   72 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106410779 (LOC106410779), mRNA	uncharacterized LOC106410779(LOC106410779)	coding protein	psRNATarget
XM_013890039.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *****|||||||||||||||| targets:847   CCUCAGACUCAAGGAAGCUCU   867 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106448111 (LOC106448111), mRNA	uncharacterized LOC106448111(LOC106448111)	coding protein	psRNATarget
XM_013890230.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *****|||||||||||||||| targets:262   CCUCAGACUCAAGGAAGCUCU   282 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106448328 (LOC106448328), mRNA	uncharacterized LOC106448328(LOC106448328)	coding protein	psRNATarget