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BaseInfo

ncRNA ID	ath-miR5647
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:22084264-22084683 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	47 - UCAAGUUUGAUGACGAUUCCA - 67
Stem-loop(if miRNA)	A               CCAU          AU             CCU      C  A       A   CC            -------   A      A       A       U  C    GAUA   G        A      U      C       G   C   AAA     A A   U       U     -------------      CG  UUAAAUCCUCAAGAA    ACAGCUUGAU  GAGAGUCUUCAAA   GAGUCG CA CAAACUU ACC  CUUUAAAUAUAU       ACA AAGGUA AGAAACC AUUUUGA UU GGAU    AAA ACAACACA UGGAGA UUAAAU CACCAAA UCG ACA   AUAGA C AGA AGGCAUC UAACU             CUCUAA  U  |||||||||||||||    ||||||||||  |||||||||||||   |||||| || ||||||| |||  ||||||||||||       ||| |||||| ||||||| ||||||| || ||||    ||| |||||||| |||||| |||||| ||||||| ||| |||   ||||| | ||| ||||||| |||||             ||||||  AAUUUAGGAGUUCUU    UGUUGAAUUA  CUCUCAGAGGUUU   CUUAGC GU GUUUGAA UGG  GAGAUUUAUGUA       UGU UUCCAU UCUUUGG UAAAACU AA CCUA    UUU UGUUGUGU AUCUCU AGUUUA GUGGUUU AGC UGU   UAUCU G UCU UCCGUAG AUUGA             GAGAUU  U C               AUCC          AU             UAC      A  A       C   AA            UCGUAAC   G      A       C       U  A    AUAG   A        A      C      A       A   U   ACA     C C   U       U     UUCCAAGGUUUCU      UU
Stem-loop sequence	AUUAAAUCCUCAAGAACCAUACAGCUUGAUAUGAGAGUCUUCAAACCUGAGUCGCCAACAAACUUAACCCCCUUUAAAUAUAUACAAAAGGUAAAGAAACCAAUUUUGAUUUCGGAUGAUAAAAGACAACACAAUGGAGAUUUAAAUCCACCAAAGUCGCACAAAAAUAGAACAAGAUAGGCAUCUUAACUCUCUAACGUUUUUUAGAGUCUUUGGAACCUUAGUUAUGAUGCCUUUCUCGCUCUAUACAUGUUCGAAUUUGGUGAAUUUGACUCUCUAAUGUGUUGUAUUUGAUAAUCCAAAUUCAAAAUCGGUUUCUAUACCUUGUGUCAAUGCUAUGUAUUUAGAGAAGGUCAAGUUUGAUGACGAUUCCAUUUUGGAGACUCUCUAAUUAAGUUGUCCUAUUCUUGAGGAUUUAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001333872.1	ncRNA:21   ACCUUAGCAGUAGUUUGAACU   1   ||||||||||||||||||||| targets:2532   UGGAAUCGUCAUCAAACUUGA   2552 Target Full Sequence	0.0	Arabidopsis thaliana ARG1-like 2 (ARL2), mRNA	ARG1-like 2(ARL2)	coding protein	psRNATarget
AB493579.1	ncRNA:21   ACCUUAGCAGUAGUUUGAACU   1   *||||||||||*||||||||= targets:106   GGGAAUCGUCAACAAACUUGG   126 Target Full Sequence	2.5	Arabidopsis thaliana At2g37260 mRNA for hypothetical protein, partial cds, clone: RAAt2g37260	NA	coding protein	psRNATarget
AF404862.1	ncRNA:21   ACCUUAGCAGUAGUUUGAACU   1   *||||||||||*||||||||= targets:106   GGGAAUCGUCAACAAACUUGG   126 Target Full Sequence	2.5	Arabidopsis thaliana WRKY transcription factor 44 (WRKY44) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001084546.1	ncRNA:21   ACCUUAGCAGUAGUUUGAACU   1   *||||||||||*||||||||= targets:210   GGGAAUCGUCAACAAACUUGG   230 Target Full Sequence	2.5	Arabidopsis thaliana WRKY family transcription factor family protein (TTG2), mRNA	WRKY family transcription factor family protein(TTG2)	coding protein	psRNATarget
AF516172.1	ncRNA:21   ACCUUAGCAGUAGUUUGAACU   1   *||||||||||*||||||||= targets:216   GGGAAUCGUCAACAAACUUGG   236 Target Full Sequence	2.5	Arabidopsis thaliana transcription factor WRKY44 (TTG2) mRNA, partial cds	NA	coding protein	psRNATarget
NM_001336644.1	ncRNA:21   ACCUUAGCAGUAGUUUGAACU   1   *||||||||||*||||||||= targets:218   GGGAAUCGUCAACAAACUUGG   238 Target Full Sequence	2.5	Arabidopsis thaliana WRKY family transcription factor family protein (TTG2), mRNA	WRKY family transcription factor family protein(TTG2)	coding protein	psRNATarget
AB289607.1	ncRNA:21   ACCUUAGCAGUAGUUUGAACU   1   *||||||||||*||||||||= targets:599   GGGAAUCGUCAACAAACUUGG   619 Target Full Sequence	2.5	Arabidopsis thaliana TTG2 mRNA for WRKY transcription factor, complete cds	NA	coding protein	psRNATarget
NM_129282.4	ncRNA:21   ACCUUAGCAGUAGUUUGAACU   1   *||||||||||*||||||||= targets:628   GGGAAUCGUCAACAAACUUGG   648 Target Full Sequence	2.5	Arabidopsis thaliana WRKY family transcription factor family protein (TTG2), mRNA	WRKY family transcription factor family protein(TTG2)	coding protein	psRNATarget

Reference

1	PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012).