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BaseInfo

ncRNA ID novel_bna_miR296
Species Brassica napus
Class miRNA
Genome position ChrA3:13830650-13830814 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527234
Length 21
Mature sequence(if miRNA) 1 - AAAUGCUCCAAUGUAUACCUC - 21
Stem-loop(if miRNA) --     C       U      C       A             -UACA              AAAUUAU         C  U
  AAAUG UCCAAUG AUACCU UAUAAUA AGUUUUUCUAUUU     GAAAAAUAUAGAGA       UUUUUGCCU UA A
  ||||| ||||||| |||||| ||||||| |||||||||||||     ||||||||||||||       ||||||||| ||
  UUUAC AGGUUAC UAUGGA AUAUUAU UCAAGAAGAUAAA     CUUUUUAUAUCUCU       AAAAAUGGA AU U
UU     A       U      C       C             UAUCC              AUACAAU         A  U
Stem-loop sequence AAAUGCUCCAAUGUAUACCUCUAUAAUAAAGUUUUUCUAUUUUACAGAAAAAUAUAGAGAAAAUUAUUUUUUGCCUCUAUAUUUAAAGGUAAAAAUAACAUAUCUCUAUAUUUUUCCCUAUAAAUAGAAGAACUCUAUUAUACAGGUAUUCAUUGGAACAUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013818358.1
ncRNA:21   CUCCAUAUGUAACCUCGUAAA   1
  *|*||=|*|||||||||||||
targets:781   AAUGUGUUCAUUGGAGCAUUU   801

3.0 PREDICTED: Brassica napus putative wall-associated receptor kinase-like 16 (LOC106378189), mRNA putative wall-associated receptor kinase-like 16(LOC106378189) coding protein psRNATarget