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BaseInfo

ncRNA ID	novel_bna_miR292
Species	Brassica napus
Class	miRNA
Genome position	ChrA3:28501442-28501597 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527234
Length	24
Mature sequence(if miRNA)	133 - AAAACCCUAAACCCUAAAUCCUAA - 156
Stem-loop(if miRNA)	--     C                  C -         U    G  UU G    UA    UUUUGA      G   A   U   AAAAC CUAAACCCUAAAUCCUAA C CUAAACCCU GAGU UU  A UGUU  GUGA      UUUAGA UUU GGA U   ||||| |||||||||||||||||| | ||||||||| |||| ||  | ||||  ||||      |||||| ||| |||   UUUUG GAUUUGGGAUUUAGGAUU G GAUUUGGGA UUUA GA  U GUAA  CAUU      AGAUUU GGA CCU C CG     U                  A A         -    G  UU G    CC    ----UG      G   A   A
Stem-loop sequence	AAAACCCUAAACCCUAAAUCCUAACCCUAAACCCUUGAGUGUUUUAGUGUUUAGUGAUUUUGAUUUAGAGUUUAGGAUUCAUCCAAGGGUUUAGAGUUUACCCAAUGGUUUAGGAUUUAGGGUUUAGAGAUUAGGAUUUAGGGUUUAGUGUUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013820701.1	ncRNA:24   AAUCCUAAAUCCCAAAUCCCAAAA   1   ||||||||||||||||||*||||| targets:785   UUAGGAUUUAGGGUUUAGUGUUUU   808 Target Full Sequence	1.5	PREDICTED: Brassica napus 40S ribosomal protein S17-2-like (LOC106380852), transcript variant X2, mRNA	40S ribosomal protein S17-2-like(LOC106380852)	coding protein	psRNATarget
XM_013820700.1	ncRNA:24   AAUCCUAAAUCCCAAAUCCCAAAA   1   ||||||||||||||||||*||||| targets:805   UUAGGAUUUAGGGUUUAGUGUUUU   828 Target Full Sequence	1.5	PREDICTED: Brassica napus 40S ribosomal protein S17-2-like (LOC106380852), transcript variant X1, mRNA	40S ribosomal protein S17-2-like(LOC106380852)	coding protein	psRNATarget
XM_013886300.1	ncRNA:24   AAUCCUAAAUCCCAAAUCCCAAAA   1   |||||*|||||||||||||||||* targets:408   UUAGGUUUUAGGGUUUAGGGUUUC   431 Target Full Sequence	2.0	PREDICTED: Brassica napus GDP-L-galactose phosphorylase 1 (LOC106444877), mRNA	GDP-L-galactose phosphorylase 1(LOC106444877)	coding protein	psRNATarget
XM_013827748.1	ncRNA:24   AAUC--CUAAAUCCCAAAUCCCAAAA   1   ||||--|=||||||||||||||*||| targets:432   UUAGACGGUUUAGGGUUUAGGGAUUU   457 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106387826 (LOC106387826), mRNA	uncharacterized LOC106387826(LOC106387826)	coding protein	psRNATarget
XM_013819398.1	ncRNA:24   AAUCCUAAAUCCCAAAUCCCAAAA   1   **=||||||=||||||||||*||| targets:29   AGGGGAUUUGGGGUUUAGGGCUUU   52 Target Full Sequence	2.5	PREDICTED: Brassica napus sm-like protein LSM8 (LOC106379447), transcript variant X1, mRNA	sm-like protein LSM8(LOC106379447)	coding protein	psRNATarget
XM_013819399.1	ncRNA:24   AAUCCUAAAUCCCAAAUCCCAAAA   1   **=||||||=||||||||||*||| targets:18   AGGGGAUUUGGGGUUUAGGGCUUU   41 Target Full Sequence	2.5	PREDICTED: Brassica napus sm-like protein LSM8 (LOC106379447), transcript variant X2, mRNA	sm-like protein LSM8(LOC106379447)	coding protein	psRNATarget
XM_013820803.1	ncRNA:24   AAUCCUAAAUCCCAAAUCCCAAAA   1   ||=**|||||||||||||||||** targets:353   UUGCAAUUUAGGGUUUAGGGUUGG   376 Target Full Sequence	2.5	PREDICTED: Brassica napus phytosulfokine receptor 2-like (LOC106380952), transcript variant X2, mRNA	phytosulfokine receptor 2-like(LOC106380952)	coding protein	psRNATarget
XM_013820801.1	ncRNA:24   AAUCCUAAAUCCCAAAUCCCAAAA   1   ||=**|||||||||||||||||** targets:353   UUGCAAUUUAGGGUUUAGGGUUGG   376 Target Full Sequence	2.5	PREDICTED: Brassica napus phytosulfokine receptor 2-like (LOC106380952), transcript variant X1, mRNA	phytosulfokine receptor 2-like(LOC106380952)	coding protein	psRNATarget
XM_013892872.1	ncRNA:24   AAUCCUAAAUCCCAAAUCCCAAAA   1   ||--||||||||||||||||*||* targets:2395   UU--GAUUUAGGGUUUAGGGAUUG   2416 Target Full Sequence	2.5	PREDICTED: Brassica napus delta-1-pyrroline-5-carboxylate synthase A-like (LOC106451021), mRNA	delta-1-pyrroline-5-carboxylate synthase A-like(LOC106451021)	coding protein	psRNATarget
XM_013836602.1	ncRNA:24   AAUCCUAAAUCCCAAAUCCCAAAA   1   ||--||||||||||||||||*||* targets:2401   UU--GAUUUAGGGUUUAGGGAUUG   2422 Target Full Sequence	2.5	PREDICTED: Brassica napus delta-1-pyrroline-5-carboxylate synthase A-like (LOC106396262), mRNA	delta-1-pyrroline-5-carboxylate synthase A-like(LOC106396262)	coding protein	psRNATarget
XM_013879122.1	ncRNA:24   AAUCCUAAAUCCCAAAUCCCAAAA   1   ||--||||||||||||||*||||* targets:2369   UU--GAUUUAGGGUUUAGAGUUUG   2390 Target Full Sequence	2.5	PREDICTED: Brassica napus delta-1-pyrroline-5-carboxylate synthase A-like (LOC106438070), mRNA	delta-1-pyrroline-5-carboxylate synthase A-like(LOC106438070)	coding protein	psRNATarget
AF314811.1	ncRNA:24   AAUCCUAAAUCCCAAAUCCCAAAA   1   ||--||||||||||||||||*||* targets:2373   UU--GAUUUAGGGUUUAGGGAUUG   2394 Target Full Sequence	2.5	Brassica napus delta 1-pyrroline-5-carboxylate synthetase A mRNA, complete cds	NA	coding protein	psRNATarget
XM_013861413.1	ncRNA:24   AAUCCUAAAUCCCAAAUCCCAAAA   1   ||--||||||||||||||*||||* targets:2380   UU--GAUUUAGGGUUUAGAGUUUG   2401 Target Full Sequence	2.5	PREDICTED: Brassica napus delta-1-pyrroline-5-carboxylate synthase A-like (LOC106420560), mRNA	delta-1-pyrroline-5-carboxylate synthase A-like(LOC106420560)	coding protein	psRNATarget
XM_013788139.1	ncRNA:24   AAUC-CU-AAAUCCCAAAUCCCAAAA   1   *|=|-||-|||*|||||||||||||| targets:2537   GUGGUGAGUUUUGGGUUUAGGGUUUU   2562 Target Full Sequence	3.0	PREDICTED: Brassica napus B3 domain-containing transcription repressor VAL1-like (LOC106348400), mRNA	B3 domain-containing transcription repressor VAL1-like(LOC106348400)	coding protein	psRNATarget
XM_013807233.1	ncRNA:24   AAUC-CU-AAAUCCCAAAUCCCAAAA   1   *|=|-||-|||*|||||||||||||| targets:3041   GUGGUGAGUUUUGGGUUUAGGGUUUU   3066 Target Full Sequence	3.0	PREDICTED: Brassica napus B3 domain-containing transcription repressor VAL1-like (LOC106367461), transcript variant X1, mRNA	B3 domain-containing transcription repressor VAL1-like(LOC106367461)	coding protein	psRNATarget
XM_013807235.1	ncRNA:24   AAUC-CU-AAAUCCCAAAUCCCAAAA   1   *|=|-||-|||*|||||||||||||| targets:3041   GUGGUGAGUUUUGGGUUUAGGGUUUU   3066 Target Full Sequence	3.0	PREDICTED: Brassica napus B3 domain-containing transcription repressor VAL1-like (LOC106367461), transcript variant X2, mRNA	B3 domain-containing transcription repressor VAL1-like(LOC106367461)	coding protein	psRNATarget
XM_013888126.1	ncRNA:24   AAUC-CU-AAAUCCCAAAUCCCAAAA   1   *|=|-||-|||*|||||||||||||| targets:3522   GUGGUGAGUUUUGGGUUUAGGGUUUU   3547 Target Full Sequence	3.0	PREDICTED: Brassica napus B3 domain-containing transcription repressor VAL1-like (LOC106446410), mRNA	B3 domain-containing transcription repressor VAL1-like(LOC106446410)	coding protein	psRNATarget