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BaseInfo

ncRNA ID novel_bna_miR288
Species Brassica napus
Class miRNA
Genome position ChrA1:17402970-17403137 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527234
Length 20
Mature sequence(if miRNA) 149 - UUGGACUGAAGGGAGCUCCC - 168
Stem-loop(if miRNA) --          G      UU      CU  G U   A       A    -   AC    C   C  AA  C      --A  AAA
  GAGCUUCCUU AGUCCA  CAGAGG  GU A AUG UCCAAUU GUUU CCG  UCAU CAU CA  UA CGAGUU   CU   U
  |||||||||| ||||||  ||||||  || | ||| ||||||| |||| |||  |||| ||| ||  || ||||||   ||
  CUCGAGGGAA UCAGGU  GUUUCU  UA U UAC AGGUUAA CAGA GGC  AGUA GUA GU  AU GCUCAG   GA   U
CC          G      UG      CU  G -   A       A    U   GU    A   A  AA  U      AUA  AUU
Stem-loop sequence GAGCUUCCUUGAGUCCAUUCAGAGGCUGUGAUAUGAUCCAAUUAGUUUCCGACUCAUCCAUCCAAAUACCGAGUUACUAAAUUUUAAGAUAGACUCGUUAAAUGAAUGAAUGAUGCGGUAGACAAAUUGGAACAUUGAUUCUCUUUGGUUGGACUGAAGGGAGCUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KR076552.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:875   UGGAGCUCCCUUCAUUCCAA   894

1.5 Brassica napus MYB transcription factor 81-2 (MYB81-2.1) mRNA, complete cds NA coding protein psRNATarget
XM_013876648.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:977   UGGAGCUCCCUUCAUUCCAA   996

1.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X3, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876646.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1093   UGGAGCUCCCUUCAUUCCAA   1112

1.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X2, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013879558.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1023   UGGAGCUCCCUUCAUUCCAA   1042

1.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X3, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013863608.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1053   UGGAGCUCCCUUCAUUCCAA   1072

1.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X4, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013876651.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1101   UGGAGCUCCCUUCAUUCCAA   1120

1.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X6, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013863607.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1073   UGGAGCUCCCUUCAUUCCAA   1092

1.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X3, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013876650.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1101   UGGAGCUCCCUUCAUUCCAA   1120

1.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X5, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876649.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1101   UGGAGCUCCCUUCAUUCCAA   1120

1.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X4, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876645.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1101   UGGAGCUCCCUUCAUUCCAA   1120

1.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X1, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013894677.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1115   UGGAGCUCCCUUCAUUCCAA   1134

1.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X2, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013879555.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1266   UGGAGCUCCCUUCAUUCCAA   1285

1.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X1, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013828451.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1344   UGGAGCUCCCUUCAUUCCAA   1363

1.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106388394), mRNA transcription factor MYB104-like(LOC106388394) coding protein psRNATarget
XM_013828453.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1344   UGGAGCUCCCUUCAUUCCAA   1363

1.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106388396), mRNA transcription factor MYB104-like(LOC106388396) coding protein psRNATarget
XM_013879650.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1344   UGGAGCUCCCUUCAUUCCAA   1363

1.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438484), mRNA transcription factor MYB104-like(LOC106438484) coding protein psRNATarget
XM_013879557.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1478   UGGAGCUCCCUUCAUUCCAA   1497

1.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X2, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013894678.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1568   UGGAGCUCCCUUCAUUCCAA   1587

1.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X3, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013894676.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1568   UGGAGCUCCCUUCAUUCCAA   1587

1.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X1, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013863606.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1645   UGGAGCUCCCUUCAUUCCAA   1664

1.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X2, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013863605.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1645   UGGAGCUCCCUUCAUUCCAA   1664

1.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X1, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013863609.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1645   UGGAGCUCCCUUCAUUCCAA   1664

1.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X5, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
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