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BaseInfo

ncRNA ID	novel_bna_miR279
Species	Brassica napus
Class	miRNA
Genome position	ChrC7:19487204-19487406 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527234
Length	21
Mature sequence(if miRNA)	1 - ACCCUAAACCCUAAACCCCUA - 21
Stem-loop(if miRNA)	---------                  ---         -   AUUUAAACCCUAAAACAUCAACUCUAGGGUUUUAGGGUUUAGGGUUUAGGGUUUAAGGUUUAGG          ACCCUAAACCCUAAACCC   CUAAGCCUU CGA                                                                G          ||||||||||||||||||   ||||||||| |||          UGGGAUUUGGGAUUUGGG   UUUUAAUUG GAA                                                                C UUUGAGAUU                  AUU         G   CUGUGAUUUUGUAGUUGAGAUUUGGGAUUUGGAAGUUGAGAUUUGGGAUUUGAGAUUUAGGAUU
Stem-loop sequence	ACCCUAAACCCUAAACCCCUAAGCCUUCGAAUUUAAACCCUAAAACAUCAACUCUAGGGUUUUAGGGUUUAGGGUUUAGGGUUUAAGGUUUAGGGCUUAGGAUUUAGAGUUUAGGGUUUAGAGUUGAAGGUUUAGGGUUUAGAGUUGAUGUUUUAGUGUCAAGGGUUAAUUUUUUAGGGUUUAGGGUUUAGGGUUUAGAGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013891750.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   |*|||||||||||||||||*| targets:1674   UUGGGGUUUAGGGUUUAGGCU   1694 Target Full Sequence	1.5	PREDICTED: Brassica napus probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC106450088), transcript variant X1, mRNA	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10(LOC106450088)	coding protein	psRNATarget
XM_013891758.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   |*|||||||||||||||||*| targets:2068   UUGGGGUUUAGGGUUUAGGCU   2088 Target Full Sequence	1.5	PREDICTED: Brassica napus probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC106450088), transcript variant X2, mRNA	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10(LOC106450088)	coding protein	psRNATarget
XM_013891764.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   |*|||||||||||||||||*| targets:2239   UUGGGGUUUAGGGUUUAGGCU   2259 Target Full Sequence	1.5	PREDICTED: Brassica napus probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC106450088), transcript variant X3, mRNA	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10(LOC106450088)	coding protein	psRNATarget
XM_013814992.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   |=||||*|||||||||||*|| targets:93   UGGGGGGUUAGGGUUUAGCGU   113 Target Full Sequence	2.5	PREDICTED: Brassica napus chaperone protein ClpB1-like (LOC106375094), mRNA	chaperone protein ClpB1-like(LOC106375094)	coding protein	psRNATarget
XM_013817796.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   |=||||*|||||||||||*|| targets:93   UGGGGGGUUAGGGUUUAGCGU   113 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106377538 (LOC106377538), mRNA	uncharacterized LOC106377538(LOC106377538)	coding protein	psRNATarget
XM_013837811.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   |*|||||||||*||||||||* targets:1188   UUGGGGUUUAGCGUUUAGGGC   1208 Target Full Sequence	2.5	PREDICTED: Brassica napus F-box/kelch-repeat protein SKIP11-like (LOC106397226), transcript variant X2, mRNA	F-box/kelch-repeat protein SKIP11-like(LOC106397226)	coding protein	psRNATarget
XM_013837810.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   |*|||||||||*||||||||* targets:1260   UUGGGGUUUAGCGUUUAGGGC   1280 Target Full Sequence	2.5	PREDICTED: Brassica napus F-box/kelch-repeat protein SKIP11-like (LOC106397226), transcript variant X1, mRNA	F-box/kelch-repeat protein SKIP11-like(LOC106397226)	coding protein	psRNATarget
XM_013785823.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   **|||||||||*||||||||* targets:1190   CUGGGGUUUAGCGUUUAGGGC   1210 Target Full Sequence	2.5	PREDICTED: Brassica napus F-box/kelch-repeat protein SKIP11-like (LOC106346478), transcript variant X2, mRNA	F-box/kelch-repeat protein SKIP11-like(LOC106346478)	coding protein	psRNATarget
XM_013785821.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   **|||||||||*||||||||* targets:1191   CUGGGGUUUAGCGUUUAGGGC   1211 Target Full Sequence	2.5	PREDICTED: Brassica napus F-box/kelch-repeat protein SKIP11-like (LOC106346477), transcript variant X3, mRNA	F-box/kelch-repeat protein SKIP11-like(LOC106346477)	coding protein	psRNATarget
XM_013785820.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   **|||||||||*||||||||* targets:1262   CUGGGGUUUAGCGUUUAGGGC   1282 Target Full Sequence	2.5	PREDICTED: Brassica napus F-box/kelch-repeat protein SKIP11-like (LOC106346477), transcript variant X2, mRNA	F-box/kelch-repeat protein SKIP11-like(LOC106346477)	coding protein	psRNATarget
XM_013785818.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   **|||||||||*||||||||* targets:1262   CUGGGGUUUAGCGUUUAGGGC   1282 Target Full Sequence	2.5	PREDICTED: Brassica napus F-box/kelch-repeat protein SKIP11-like (LOC106346477), transcript variant X1, mRNA	F-box/kelch-repeat protein SKIP11-like(LOC106346477)	coding protein	psRNATarget
XM_013785822.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   **|||||||||*||||||||* targets:1262   CUGGGGUUUAGCGUUUAGGGC   1282 Target Full Sequence	2.5	PREDICTED: Brassica napus F-box/kelch-repeat protein SKIP11-like (LOC106346478), transcript variant X1, mRNA	F-box/kelch-repeat protein SKIP11-like(LOC106346478)	coding protein	psRNATarget
XM_013886986.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   |**||||||||||||||*||| targets:26   UCAGGGUUUAGGGUUUAUGGU   46 Target Full Sequence	2.5	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At4g26800-like (LOC106445419), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At4g26800-like(LOC106445419)	coding protein	psRNATarget
XM_013886978.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   |**||||||||||||||*||| targets:26   UCAGGGUUUAGGGUUUAUGGU   46 Target Full Sequence	2.5	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At4g26800-like (LOC106445419), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At4g26800-like(LOC106445419)	coding protein	psRNATarget
XM_013865572.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   |****|||||||||||||||| targets:23   UCUCAGUUUAGGGUUUAGGGU   43 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106424823 (LOC106424823), transcript variant X2, mRNA	uncharacterized LOC106424823(LOC106424823)	coding protein	psRNATarget
XM_013892463.1	ncRNA:21   AUCCCCAAAUCCCAAAUCCCA   1   |****|||||||||||||||| targets:25   UCUCAGUUUAGGGUUUAGGGU   45 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106450725 (LOC106450725), transcript variant X2, mRNA	uncharacterized LOC106450725(LOC106450725)	coding protein	psRNATarget