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BaseInfo

ncRNA ID novel_bna_miR277
Species Brassica napus
Class miRNA
Genome position ChrC7:18896578-18896658 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527234;SRR537603;SRR538067;SRR2015555
Length 21
Mature sequence(if miRNA) 61 - GCGUAUGAGGAGCCAAGCAUA - 81
Stem-loop(if miRNA) --   C       CU         A   UA  U  AU  A
  UGC UGGCUCC  GUAUGCCAU CAC  AG UC  CG U
  ||| |||||||  ||||||||| |||  || ||  || C
  ACG ACCGAGG  UAUGCGGUA GUG  UC AG  GC U
AU   A       AG         G   CC  C  CG  U
Stem-loop sequence UGCCUGGCUCCCUGUAUGCCAUACACUAAGUUCAUCGAUCUUCGGCGACCUCCGUGGAUGGCGUAUGAGGAGCCAAGCAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013884445.1
ncRNA:21   AUACGAACCGAGGAGUAUGCG   1
  *|**|*|||||||||||||||
targets:325   CAAACAUGGCUCCUCAUACGC   345

3.0 PREDICTED: Brassica napus uncharacterized LOC106442802 (LOC106442802), mRNA uncharacterized LOC106442802(LOC106442802) coding protein psRNATarget
XM_013814132.1
ncRNA:21   AUACGAACCGAGGAGUAUGCG   1
  *|**|*|||||||||||||||
targets:343   CAAACAUGGCUCCUCAUACGC   363

3.0 PREDICTED: Brassica napus uncharacterized LOC106374027 (LOC106374027), mRNA uncharacterized LOC106374027(LOC106374027) coding protein psRNATarget