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BaseInfo

ncRNA ID	novel_bna_miR268
Species	Brassica napus
Class	miRNA
Genome position	ChrC4:5965104-5965286 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527234
Length	24
Mature sequence(if miRNA)	160 - AAAAACAAACCAAUCGCGGACCGC - 183
Stem-loop(if miRNA)	-- U              AU                --AAACAAAAA         UCUA       -----------C   AC       C   G     G UUCGCGAUUGGUUU  UUUUUAAUUUUUUUUU           AAAAAAAAA    AAGGACC            CUU  CGAUAAU AUG UCU   | ||||||||||||||  ||||||||||||||||           |||||||||    |||||||            |||  ||||||| ||| ||A   C AGGCGCUAACCAAA  AAAAAUUAAAAAAAAA           UUUUUUUUU    UUCCUGG            GAG  GUUAUUA UAC AGA CG C              -C                AAUUUAGCCUA         CAAA       UUAAUAAUUCCU   CC       C   G
Stem-loop sequence	GUUUCGCGAUUGGUUUAUUUUUUAAUUUUUUUUUAAACAAAAAAAAAAAAAAUCUAAAGGACCCCUUACCGAUAAUCAUGGUCUAAGAGCAUCAUUAUUGCCGAGUCCUUAAUAAUUGGUCCUUAAACUUUUUUUUUAUCCGAUUUAAAAAAAAAAAUUAAAAACAAACCAAUCGCGGACCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013822194.1	ncRNA:24   CGCCAGGCGCUAACCAAACAAAAA   1   ||||*||||||||||||||||||| targets:7   GCGGCCCGCGAUUGGUUUGUUUUU   30 Target Full Sequence	0.0	PREDICTED: Brassica napus probable protein phosphatase 2C 34 (LOC106382212), transcript variant X2, mRNA	probable protein phosphatase 2C 34(LOC106382212)	coding protein	psRNATarget
XM_013859394.1	ncRNA:24   CGCCAGGC-GCUAACCAAACAAAAA   1   *|||**||-|||||||||||||||| targets:420   CCGGGACGACGAUUGGUUUGUUUUU   444 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106418650 (LOC106418650), mRNA	uncharacterized LOC106418650(LOC106418650)	coding protein	psRNATarget
XM_013791854.1	ncRNA:24   CGCCAGGCGCUAACCAAACAAAAA   1   |=||**||*|*||||||||||||| targets:378   GUGGGACGGGCUUGGUUUGUUUUU   401 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106352184 (LOC106352184), mRNA	uncharacterized LOC106352184(LOC106352184)	coding protein	psRNATarget