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BaseInfo

ncRNA ID ath-miRf10572-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - UCCAUGAAAUGCCAUGAGAG - NA
Stem-loop(if miRNA)      A                       AAUUUCAG    U  --  CGAAUAUUGAUGGGCACAGAUGUUGUGAAAAAUGUGAAUAAAAACAAUGCGUCUCAUGCCGUGCUGUUUGAA
UCGAA UCUCUCUCAUGGCAUUUCAUGGA        GUCC UC  AG                                                                        G
||||| |||||||||||||||||||||||        |||| ||  ||
AGCUU AGAGAGAGUACCGUAAAGUACCU        GUCU AU  AC                                                                        C
     A                       --------    -  CA  UGAACUCAUAUUAGUUGUUAACUUGGAGUUUUUCAAUUACGAUAAAGAAUCUAUCUCGAAUGGUCCCUCUCU
Stem-loop sequence UCGAAAUCUCUCUCAUGGCAUUUCAUGGAAAUUUCAGGUCCUUCAGCGAAUAUUGAUGGGCACAGAUGUUGUGAAAAAUGUGAAUAAAAACAAUGCGUCUCAUGCCGUGCUGUUUGAAGCUCUCUCCCUGGUAAGCUCUAUCUAAGAAAUAGCAUUAACUUUUUGAGGUUCAAUUGUUGAUUAUACUCAAGUCAACUAUCUGUCCAUGAAAUGCCAUGAGAGAGAAUUCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AF082157.1
ncRNA:20   GAGAGUACCGUAAAGUACCU   1
  *||||||||||||*||||||
targets:1350   AUCUCAUGGCAUUACAUGGA   1369

1.5 Arabidopsis thaliana beta-glucosidase (GLUC) mRNA, complete cds NA coding protein psRNATarget
NM_111235.4
ncRNA:20   GAGAGUACCGUAAAGUACCU   1
  *||||||||||||*||||||
targets:1386   AUCUCAUGGCAUUACAUGGA   1405

1.5 Arabidopsis thaliana beta glucosidase 25 (BGLU25), mRNA beta glucosidase 25(BGLU25) coding protein psRNATarget
AY142546.1
ncRNA:20   GAGAGUACCGUAAAGUACCU   1
  *||||||||||||*||||||
targets:2706   AUCUCAUGGCAUUACAUGGA   2725

1.5 UNVERIFIED: Arabidopsis thaliana clone RAFL08-16-E21 (R11273) mRNA sequence NA coding protein psRNATarget