ncRNA ID | ath-miRf10572-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 20 |
Mature sequence(if miRNA) | NA - UCCAUGAAAUGCCAUGAGAG - NA |
Stem-loop(if miRNA) |
     A                       AAUUUCAG    U  --  CGAAUAUUGAUGGGCACAGAUGUUGUGAAAAAUGUGAAUAAAAACAAUGCGUCUCAUGCCGUGCUGUUUGAA UCGAA UCUCUCUCAUGGCAUUUCAUGGA        GUCC UC  AG                                                                        G ||||| |||||||||||||||||||||||        |||| ||  || AGCUU AGAGAGAGUACCGUAAAGUACCU        GUCU AU  AC                                                                        C      A                       --------    -  CA  UGAACUCAUAUUAGUUGUUAACUUGGAGUUUUUCAAUUACGAUAAAGAAUCUAUCUCGAAUGGUCCCUCUCU |
Stem-loop sequence | UCGAAAUCUCUCUCAUGGCAUUUCAUGGAAAUUUCAGGUCCUUCAGCGAAUAUUGAUGGGCACAGAUGUUGUGAAAAAUGUGAAUAAAAACAAUGCGUCUCAUGCCGUGCUGUUUGAAGCUCUCUCCCUGGUAAGCUCUAUCUAAGAAAUAGCAUUAACUUUUUGAGGUUCAAUUGUUGAUUAUACUCAAGUCAACUAUCUGUCCAUGAAAUGCCAUGAGAGAGAAUUCGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AF082157.1 |
|
1.5 | Arabidopsis thaliana beta-glucosidase (GLUC) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
NM_111235.4 |
|
1.5 | Arabidopsis thaliana beta glucosidase 25 (BGLU25), mRNA | beta glucosidase 25(BGLU25) | coding protein | psRNATarget | |||||||||
AY142546.1 |
|
1.5 | UNVERIFIED: Arabidopsis thaliana clone RAFL08-16-E21 (R11273) mRNA sequence | NA | coding protein | psRNATarget |