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BaseInfo

ncRNA ID	novel_bna_miR260
Species	Brassica napus
Class	miRNA
Genome position	ChrC1:17503653-17503822 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527234;SRR537657;SRR537857;SRR527229
Length	21
Mature sequence(if miRNA)	1 - AGAGCUUCCUUGAGUCCAUUC - 21
Stem-loop(if miRNA)	--A     U    G      U   C   UU  G U           A -  U   A     U   C  AA  C     CACCAAAA    GAGCU CCUU AGUCCA UCA AGG  GU A AUGAUCCAAUU G CU CCG AUCAU CAU CA  UA UGAGU        U    ||||| |||| |||||| ||| |||  || | ||||||||||| | || ||| ||||| ||| ||  || |||||    CUCGA GGAA UCAGGU AGU UCU  UA U UAUUGGGUUAA C GA GGC UAGUA GUA GU  AU GCUCA        U UCC     U    G      U   A   CU  G -           A A  U   G     U   A  AA  U     AAUCAAAC
Stem-loop sequence	AGAGCUUCCUUGAGUCCAUUCACAGGUUGUGAUAUGAUCCAAUUAGCUUCCGAAUCAUUCAUCCAAAUACUGAGUCACCAAAAUUCAAACUAAACUCGUUAAAUGAAUGUAUGAUGCGGUAGACAAAUUGGGUUAUUGAUUCUCUAUGAUUGGACUGAAGGUAGCUCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013888863.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *=|||*=|||||||||||||| targets:1383   AGAUGAGCUCAAGGAAGCUCU   1403 Target Full Sequence	2.0	PREDICTED: Brassica napus calcium-dependent protein kinase 24-like (LOC106447016), mRNA	calcium-dependent protein kinase 24-like(LOC106447016)	coding protein	psRNATarget
XM_013836053.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *=|||*=|||||||||||||| targets:1383   AGAUGAGCUCAAGGAAGCUCU   1403 Target Full Sequence	2.0	PREDICTED: Brassica napus calcium-dependent protein kinase 24-like (LOC106395661), mRNA	calcium-dependent protein kinase 24-like(LOC106395661)	coding protein	psRNATarget
XM_013858742.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *=|||*=|||||||||||||| targets:1499   AGAUGAGCUCAAGGAAGCUCU   1519 Target Full Sequence	2.0	PREDICTED: Brassica napus calcium-dependent protein kinase 24-like (LOC106418063), mRNA	calcium-dependent protein kinase 24-like(LOC106418063)	coding protein	psRNATarget
XM_013890152.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   |=|||*==||||||||||||| targets:1341   GGAUGAGUUCAAGGAAGCUCU   1361 Target Full Sequence	3.0	PREDICTED: Brassica napus proline--tRNA ligase, cytoplasmic-like (LOC106448237), mRNA	proline--tRNA ligase, cytoplasmic-like(LOC106448237)	coding protein	psRNATarget
XM_013873158.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   |=|||*==||||||||||||| targets:1840   GGAUGAGUUCAAGGAAGCUCU   1860 Target Full Sequence	3.0	PREDICTED: Brassica napus proline--tRNA ligase, cytoplasmic-like (LOC106432319), mRNA	proline--tRNA ligase, cytoplasmic-like(LOC106432319)	coding protein	psRNATarget
XM_013844194.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *****|||||||||||||||| targets:604   CCUCAGACUCAAGGAAGCUCU   624 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106403354 (LOC106403354), mRNA	uncharacterized LOC106403354(LOC106403354)	coding protein	psRNATarget
XM_013851385.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *****|||||||||||||||| targets:52   CCUCAGACUCAAGGAAGCUCU   72 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106410779 (LOC106410779), mRNA	uncharacterized LOC106410779(LOC106410779)	coding protein	psRNATarget
XM_013890039.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *****|||||||||||||||| targets:847   CCUCAGACUCAAGGAAGCUCU   867 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106448111 (LOC106448111), mRNA	uncharacterized LOC106448111(LOC106448111)	coding protein	psRNATarget
XM_013890230.1	ncRNA:21   CUUACCUGAGUUCCUUCGAGA   1   *****|||||||||||||||| targets:262   CCUCAGACUCAAGGAAGCUCU   282 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106448328 (LOC106448328), mRNA	uncharacterized LOC106448328(LOC106448328)	coding protein	psRNATarget