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BaseInfo

ncRNA ID	novel_bna_miR259
Species	Brassica napus
Class	miRNA
Genome position	ChrA7:18009903-18009988 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363495
Length	24
Mature sequence(if miRNA)	1 - AGAGAUUAGGGUUUAGGGUUUAGA - 24
Stem-loop(if miRNA)	--          G      G      G    UGUUUUAGGGUU   AGAGAUUAGG UUUAGG UUUAGA UUGA            U   |||||||||| |||||| |||||| ||||   UUUUUGAUUU AGAUUU GGAUUU GGAU            A GA          G      G      G    UCUUUAAUUGGG
Stem-loop sequence	AGAGAUUAGGGUUUAGGGUUUAGAGUUGAUGUUUUAGGGUUUAGGGUUAAUUUCUUAGGGUUUAGGGUUUAGAGUUUAGUUUUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013846916.1	ncRNA:24   AGAUUUGGGAUUUGGGAUUAGAGA   1   ***|||||||||||||||||=||| targets:46   CACAAACCCUAAACCCUAAUUUCU   69 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106406291 (LOC106406291), mRNA	uncharacterized LOC106406291(LOC106406291)	coding protein	psRNATarget
XM_013800006.1	ncRNA:24   AGAUUUGGGAUUUGGGAUUAGAGA   1   ***|||||||||||||||||=||| targets:46   CACAAACCCUAAACCCUAAUUUCU   69 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106360414 (LOC106360414), mRNA	uncharacterized LOC106360414(LOC106360414)	coding protein	psRNATarget
XM_013822969.1	ncRNA:24   AGAUUUGGGAUUUGGGAUUAGAGA   1   **|==|==|||||||||||||||| targets:132   CAUGGAUUCUAAACCCUAAUCUCU   155 Target Full Sequence	2.0	PREDICTED: Brassica napus U-box domain-containing protein 38 (LOC106382884), mRNA	U-box domain-containing protein 38(LOC106382884)	coding protein	psRNATarget
XM_013792884.1	ncRNA:24   AGAUUUGGGAUUUGGGAUUAGAGA   1   |||**|||=|=||||||||||||| targets:29   UCUCCACCUUGAACCCUAAUCUCU   52 Target Full Sequence	2.0	PREDICTED: Brassica napus putative ribosome biogenesis protein C8F11.04 (LOC106353178), mRNA	putative ribosome biogenesis protein C8F11.04(LOC106353178)	coding protein	psRNATarget
XM_013869006.1	ncRNA:24   AGAUUUGGGAUUUGGGAUUAGAGA   1   |||***=||||||||||||||||| targets:33   UCUCCUUCCUAAACCCUAAUCUCU   56 Target Full Sequence	2.0	PREDICTED: Brassica napus ribosomal L1 domain-containing protein 1-like (LOC106428255), mRNA	ribosomal L1 domain-containing protein 1-like(LOC106428255)	coding protein	psRNATarget
XM_013866082.1	ncRNA:24   AGAUUUGGGAUUUGGGAUUAGAGA   1   ***||||||||||*|||||||||* targets:52   AAAAAACCCUAAAACCUAAUCUCG   75 Target Full Sequence	2.5	PREDICTED: Brassica napus probable beta-1,4-xylosyltransferase IRX10 (LOC106425347), mRNA	probable beta-1,4-xylosyltransferase IRX10(LOC106425347)	coding protein	psRNATarget
XM_013866139.1	ncRNA:24   AGAUUUGGGAUUUGGGAUUAGAGA   1   ***||||||||||*|||||||||* targets:55   AAAAAACCCUAAAACCUAAUCUCG   78 Target Full Sequence	2.5	PREDICTED: Brassica napus probable beta-1,4-xylosyltransferase IRX10 (LOC106425407), mRNA	probable beta-1,4-xylosyltransferase IRX10(LOC106425407)	coding protein	psRNATarget
XM_013831043.1	ncRNA:24   AGAUUUGGGAUUUGGGAUUAGAGA   1   *|*||||=||*||||||||||||* targets:56   GCGAAACUCUUAACCCUAAUCUCG   79 Target Full Sequence	3.0	PREDICTED: Brassica napus probable E3 ubiquitin-protein ligase ARI2 (LOC106390549), transcript variant X2, mRNA	probable E3 ubiquitin-protein ligase ARI2(LOC106390549)	coding protein	psRNATarget
XM_013831042.1	ncRNA:24   AGAUUUGGGAUUUGGGAUUAGAGA   1   *|*||||=||*||||||||||||* targets:56   GCGAAACUCUUAACCCUAAUCUCG   79 Target Full Sequence	3.0	PREDICTED: Brassica napus probable E3 ubiquitin-protein ligase ARI2 (LOC106390549), transcript variant X1, mRNA	probable E3 ubiquitin-protein ligase ARI2(LOC106390549)	coding protein	psRNATarget