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BaseInfo

ncRNA ID novel_bna_miR246
Species Brassica napus
Class miRNA
Genome position ChrA3:35276665-35276740 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527233
Length 21
Mature sequence(if miRNA) 1 - AAACAUAUAAUAUUAGGAGAC - 21
Stem-loop(if miRNA) --                          GAGUCUU    U
  AAACAUAUAAUAUUAGGAGACCCAUA       AGGU A
  ||||||||||||||||||||||||||       |||| A
  UUUGUAUAUUAUAAUCCUCUGGGUAU       UCUA A
AG                          -----AU    C
Stem-loop sequence AAACAUAUAAUAUUAGGAGACCCAUAGAGUCUUAGGUUAAACAUCUUAUAUGGGUCUCCUAAUAUUAUAUGUUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013836857.1
ncRNA:21   CAGAGGAUUAUAAUAUACAAA   1
  ***||||||||||||||*|||
targets:1132   UGAUCCUAAUAUUAUAUUUUU   1152

2.5 PREDICTED: Brassica napus uncharacterized LOC106396461 (LOC106396461), mRNA uncharacterized LOC106396461(BNAC01G18140D) coding protein psRNATarget