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BaseInfo

ncRNA ID novel_bna_miR244
Species Brassica napus
Class miRNA
Genome position ChrA10:5297489-5297622 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 24
Mature sequence(if miRNA) 111 - AGAGGAACUCUAUUAUAAAGGCAU - 134
Stem-loop(if miRNA) --    C                     -  GA              AAAAUUAU    UG   C  U
  GUCU UAUAAUAGAGUUCCUCUAUUU UA  GGAAAAUAUAGGGG        UUUU  CCU UA A
  |||| ||||||||||||||||||||| ||  ||||||||||||||        ||||  ||| ||
  CGGA AUAUUAUCUCAAGGAGAUAAA AU  UCUUUUAUAUCUCU        AAAA  GGA AU U
UA    A                     U  AC              -AUACGAU    GU   A  U
Stem-loop sequence GUCUCUAUAAUAGAGUUCCUCUAUUUUAGAGGAAAAUAUAGGGGAAAAUUAUUUUUUGCCUCUAUAUUUAAAGGUGAAAAUAGCAUAUCUCUAUAUUUUCUCAUAUAAAUAGAGGAACUCUAUUAUAAAGGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013866108.1
ncRNA:24   UACGGAAAUAUUAUCUCAAGGAGA   1
  =***|||||*||||||||||||=|
targets:21   GAAACUUUAAAAUAGAGUUCCUUU   44

2.5 PREDICTED: Brassica napus uncharacterized LOC106425370 (LOC106425370), transcript variant X2, mRNA uncharacterized LOC106425370(LOC106425370) coding protein psRNATarget
XM_013819929.1
ncRNA:24   UACGGAAAUAUUAUCUCAAGGAGA   1
  *|*=||||||*|||*|||||||||
targets:15   CUAUCUUUAUUAUAAAGUUCCUCU   38

2.5 PREDICTED: Brassica napus uncharacterized LOC106380113 (LOC106380113), mRNA uncharacterized LOC106380113(LOC106380113) coding protein psRNATarget