ncRNA ID | novel_bna_miR244 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrA10:5297489-5297622 [+] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR1363495 |
Length | 24 |
Mature sequence(if miRNA) | 111 - AGAGGAACUCUAUUAUAAAGGCAU - 134 |
Stem-loop(if miRNA) |
--    C                     -  GA              AAAAUUAU    UG   C  U   GUCU UAUAAUAGAGUUCCUCUAUUU UA  GGAAAAUAUAGGGG        UUUU  CCU UA A   |||| ||||||||||||||||||||| ||  ||||||||||||||        ||||  ||| ||   CGGA AUAUUAUCUCAAGGAGAUAAA AU  UCUUUUAUAUCUCU        AAAA  GGA AU U UA    A                     U  AC              -AUACGAU    GU   A  U |
Stem-loop sequence | GUCUCUAUAAUAGAGUUCCUCUAUUUUAGAGGAAAAUAUAGGGGAAAAUUAUUUUUUGCCUCUAUAUUUAAAGGUGAAAAUAGCAUAUCUCUAUAUUUUCUCAUAUAAAUAGAGGAACUCUAUUAUAAAGGCAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013866108.1 |
|
2.5 | PREDICTED: Brassica napus uncharacterized LOC106425370 (LOC106425370), transcript variant X2, mRNA | uncharacterized LOC106425370(LOC106425370) | coding protein | psRNATarget | |||||||||
XM_013819929.1 |
|
2.5 | PREDICTED: Brassica napus uncharacterized LOC106380113 (LOC106380113), mRNA | uncharacterized LOC106380113(LOC106380113) | coding protein | psRNATarget |