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BaseInfo

ncRNA ID	novel_bna_miR238
Species	Brassica napus
Class	miRNA
Genome position	ChrC7:13279131-13279272 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527233
Length	22
Mature sequence(if miRNA)	1 - UAGCCAAGGAUGACUUGCCUAC - 22
Stem-loop(if miRNA)	--          U    U     -CU     -GCGAA G           -----     C  G          AA   UAGCCAAGGA GACU GCCUA   UCUUU      G AAAAUGGUCAC     GGUGU AU UUUGAAAGUG  U   |||||||||| |||| |||||   |||||      | |||||||||||     ||||| || ||||||||||   AUCGGUUCCU CUGA CGGAU   AGAAA      C UUUUACCAGUG     CUAUA UG GAAUUUUUAC  A CU          -    -     UAU     AAUAUG G           AUUAA     -  A          AU
Stem-loop sequence	UAGCCAAGGAUGACUUGCCUACUUCUUUGCGAAGGAAAAUGGUCACGGUGUCAUGUUUGAAAGUGAAUAUACAUUUUUAAGAGUAUAUCAAUUAGUGACCAUUUUGCGUAUAAAAAGAUAUUAGGCAGUCUCCUUGGCUAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013872447.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:893   AAGGGGAAGUCAUCCUUGGCUA   914 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106431642), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-5-like(LOC106431642)	coding protein	psRNATarget
XM_013872446.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:896   AAGGGGAAGUCAUCCUUGGCUA   917 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106431642), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-5-like(LOC106431642)	coding protein	psRNATarget
XM_013846894.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1275   AAGGGGAAGUCAUCCUUGGCUA   1296 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106406270), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106406270)	coding protein	psRNATarget
XM_013843696.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1279   AAGGGGAAGUCAUCCUUGGCUA   1300 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106402883), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106402883)	coding protein	psRNATarget
XM_013840111.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1287   AGGGGGAAGUCAUCCUUGGCUA   1308 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106399653), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106399653)	coding protein	psRNATarget
XM_013837663.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1288   AGGGGGAAGUCAUCCUUGGCUA   1309 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106397102), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106397102)	coding protein	psRNATarget
XM_013821179.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1275   CGGGGGAAGUCAUCCUUGGCUA   1296 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013846895.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1222   AAGGGGAAGUCAUCCUUGGCUA   1243 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106406271), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106406271)	coding protein	psRNATarget
XM_013821178.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1294   CGGGGGAAGUCAUCCUUGGCUA   1315 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013843695.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1312   AAGGGGAAGUCAUCCUUGGCUA   1333 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106402883), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106402883)	coding protein	psRNATarget
XM_013794135.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1313   AAGGGGAAGUCAUCCUUGGCUA   1334 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106354243), mRNA	nuclear transcription factor Y subunit A-3-like(LOC106354243)	coding protein	psRNATarget
XM_013843873.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1376   AAGGGGAAGUCAUCCUUGGCUA   1397 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106403032), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106403032)	coding protein	psRNATarget
XM_013843872.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1384   AAGGGGAAGUCAUCCUUGGCUA   1405 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106403032), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106403032)	coding protein	psRNATarget
XM_013821177.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1389   CGGGGGAAGUCAUCCUUGGCUA   1410 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013821176.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1401   CGGGGGAAGUCAUCCUUGGCUA   1422 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013821175.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||||||||||| targets:1609   CGGGGGAAGUCAUCCUUGGCUA   1630 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-3-like (LOC106381285), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106381285)	coding protein	psRNATarget
XM_013817827.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   |**||*|||||||||||||||| targets:1122   GACGGGAAGUCAUCCUUGGCUA   1143 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-6(LOC106377560)	coding protein	psRNATarget
XM_013817826.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   |**||*|||||||||||||||| targets:1126   GACGGGAAGUCAUCCUUGGCUA   1147 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-6(LOC106377560)	coding protein	psRNATarget
XM_013817825.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   |**||*|||||||||||||||| targets:1147   GACGGGAAGUCAUCCUUGGCUA   1168 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-6(LOC106377560)	coding protein	psRNATarget
XM_013817829.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   |**||*|||||||||||||||| targets:1335   GACGGGAAGUCAUCCUUGGCUA   1356 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-6(LOC106377560)	coding protein	psRNATarget
XM_013817828.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   |**||*|||||||||||||||| targets:1339   GACGGGAAGUCAUCCUUGGCUA   1360 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-6(LOC106377560)	coding protein	psRNATarget
XM_013817830.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   |**||*|||||||||||||||| targets:1377   GACGGGAAGUCAUCCUUGGCUA   1398 Target Full Sequence	1.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-6 (LOC106377560), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-6(LOC106377560)	coding protein	psRNATarget
XM_013817546.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   |*||**|||||||||||||||| targets:865   GAAGAGAAGUCAUCCUUGGCUA   886 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106377333), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-5-like(LOC106377333)	coding protein	psRNATarget
XM_013817545.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   |*||**|||||||||||||||| targets:986   GAAGAGAAGUCAUCCUUGGCUA   1007 Target Full Sequence	2.0	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106377333), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-5-like(LOC106377333)	coding protein	psRNATarget
XM_013819709.1	ncRNA:22   CAUCCGUUCAGUAGGAACCGAU   1   **=||*|||||||*|||||||| targets:977   AAGGGGAAGUCAUACUUGGCUA   998 Target Full Sequence	2.5	PREDICTED: Brassica napus nuclear transcription factor Y subunit A-5-like (LOC106379846), mRNA	nuclear transcription factor Y subunit A-5-like(LOC106379846)	coding protein	psRNATarget