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BaseInfo

ncRNA ID	novel_bna_miR237
Species	Brassica napus
Class	miRNA
Genome position	ChrC7:19493097-19493301 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527233;SRR527236
Length	22
Mature sequence(if miRNA)	1 - AACCCUAAACCCUAAACCCCUA - 22
Stem-loop(if miRNA)	---------                   ---         -   AUUUAAACCCUAAAACAUCAACUCUAGGGUUUUAGGGUUUAGGGUUUAGGGUUUAAGGUUUAGG          AACCCUAAACCCUAAACCC   CUAAGCCUU CGA                                                                G          |||||||||||||||||||   ||||||||| |||          UUGGGAUUUGGGAUUUGGG   UUUUAAUUG GAA                                                                C AUUUGAGAU                   AUU         G   CUGUGAUUUUGUAGUUGAGAUUUGGGAUUUGGAAGUUGAGAUUUGGGAUUUGAGAUUUAGGAUU
Stem-loop sequence	AACCCUAAACCCUAAACCCCUAAGCCUUCGAAUUUAAACCCUAAAACAUCAACUCUAGGGUUUUAGGGUUUAGGGUUUAGGGUUUAAGGUUUAGGGCUUAGGAUUUAGAGUUUAGGGUUUAGAGUUGAAGGUUUAGGGUUUAGAGUUGAUGUUUUAGUGUCAAGGGUUAAUUUUUUAGGGUUUAGGGUUUAGGGUUUAGAGUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013886986.1	ncRNA:22   AUCCCCAAAUCCCAAAUCCCAA   1   ****||||*||||||||||||| targets:19   CCCCGGUUCAGGGUUUAGGGUU   40 Target Full Sequence	2.0	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At4g26800-like (LOC106445419), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At4g26800-like(LOC106445419)	coding protein	psRNATarget
XM_013886978.1	ncRNA:22   AUCCCCAAAUCCCAAAUCCCAA   1   ****||||*||||||||||||| targets:19   CCCCGGUUCAGGGUUUAGGGUU   40 Target Full Sequence	2.0	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At4g26800-like (LOC106445419), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At4g26800-like(LOC106445419)	coding protein	psRNATarget
XM_013893896.1	ncRNA:22   AUCCCCAAAUCCCAAAUCCCAA   1   |*||||||*|||||||*||||| targets:495   UUGGGGUUCAGGGUUUCGGGUU   516 Target Full Sequence	2.5	PREDICTED: Brassica napus inositol polyphosphate multikinase beta-like (LOC106451903), transcript variant X2, mRNA	inositol polyphosphate multikinase beta-like(LOC106451903)	coding protein	psRNATarget
XM_013893889.1	ncRNA:22   AUCCCCAAAUCCCAAAUCCCAA   1   |*||||||*|||||||*||||| targets:518   UUGGGGUUCAGGGUUUCGGGUU   539 Target Full Sequence	2.5	PREDICTED: Brassica napus inositol polyphosphate multikinase beta-like (LOC106451903), transcript variant X1, mRNA	inositol polyphosphate multikinase beta-like(LOC106451903)	coding protein	psRNATarget
XM_013865572.1	ncRNA:22   AUCCCCAAAUCCCAAAUCCCAA   1   |****||||||||||||||||* targets:23   UCUCAGUUUAGGGUUUAGGGUA   44 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106424823 (LOC106424823), transcript variant X2, mRNA	uncharacterized LOC106424823(LOC106424823)	coding protein	psRNATarget
XM_013892463.1	ncRNA:22   AUCCCCAAAUCCCAAAUCCCAA   1   |****||||||||||||||||* targets:25   UCUCAGUUUAGGGUUUAGGGUA   46 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106450725 (LOC106450725), transcript variant X2, mRNA	uncharacterized LOC106450725(LOC106450725)	coding protein	psRNATarget
XM_013820803.1	ncRNA:22   AUCCCCAAAUCCCAAAUCCCAA   1   |*|***|||||||||||||||| targets:353   UUGCAAUUUAGGGUUUAGGGUU   374 Target Full Sequence	3.0	PREDICTED: Brassica napus phytosulfokine receptor 2-like (LOC106380952), transcript variant X2, mRNA	phytosulfokine receptor 2-like(LOC106380952)	coding protein	psRNATarget
XM_013820801.1	ncRNA:22   AUCCCCAAAUCCCAAAUCCCAA   1   |*|***|||||||||||||||| targets:353   UUGCAAUUUAGGGUUUAGGGUU   374 Target Full Sequence	3.0	PREDICTED: Brassica napus phytosulfokine receptor 2-like (LOC106380952), transcript variant X1, mRNA	phytosulfokine receptor 2-like(LOC106380952)	coding protein	psRNATarget