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BaseInfo

ncRNA ID	novel_bna_miR211
Species	Brassica napus
Class	miRNA
Genome position	ChrA5:5914883-5915055 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527233
Length	24
Mature sequence(if miRNA)	1 - AAAACCCUAAACCCUUGGAUAAAC - 24
Stem-loop(if miRNA)	--                                                                             UC  AAA   AAAACCCUAAACCCUUGGAUAAACCUAGAUCCUUGGCUAAAUCAUAAACUCUAAAUCAAAAACACUAAACACUAAAA  CU   C   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||   C   UUUUGGGAUUUGGGAACCUAUUUGGAUCUAGGAACCGAUUUAGUAUUUGAGAUUUAGUUUUUGUGAUUUGUGAUUUU  GA   C GA                                                                             GU  GUU
Stem-loop sequence	AAAACCCUAAACCCUUGGAUAAACCUAGAUCCUUGGCUAAAUCAUAAACUCUAAAUCAAAAACACUAAACACUAAAAUCCUAAACCCUUGAGUGUUUUAGUGUUUAGUGUUUUUGAUUUAGAGUUUAUGAUUUAGCCAAGGAUCUAGGUUUAUCCAAGGGUUUAGGGUUUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013885279.1	ncRNA:24   CAA-AUAGGUUCCCAAAUCCCAAAA   1   *||-|=||=*||||||||||||||| targets:494   CUUCUGUCUUAGGGUUUAGGGUUUU   518 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106443727 (LOC106443727), mRNA	uncharacterized LOC106443727(LOC106443727)	coding protein	psRNATarget
XM_013792471.1	ncRNA:24   CAAAUAGGUUCCCAAAUCCCAAAA   1   ||**||||||||||||*||||||* targets:907   GUCGAUCCAAGGGUUUUGGGUUUG   930 Target Full Sequence	2.5	PREDICTED: Brassica napus 29 kDa ribonucleoprotein, chloroplastic-like (LOC106352831), mRNA	29 kDa ribonucleoprotein, chloroplastic-like(LOC106352831)	coding protein	psRNATarget
XM_013836798.1	ncRNA:24   CAAAUAGGUUCCCAAAUCCCAAAA   1   ||**||||||||||||*||||||* targets:808   GUCGAUCCAAGGGUUUUGGGUUUG   831 Target Full Sequence	2.5	PREDICTED: Brassica napus RNA-binding protein CP29B, chloroplastic-like (LOC106396414), mRNA	RNA-binding protein CP29B, chloroplastic-like(LOC106396414)	coding protein	psRNATarget
XM_013894578.1	ncRNA:24   CAAAUAGGUUCCCAAAUCCCAAAA   1   ||**||||||||||||*||||||* targets:959   GUCGAUCCAAGGGUUUUGGGUUUG   982 Target Full Sequence	2.5	PREDICTED: Brassica napus 29 kDa ribonucleoprotein, chloroplastic-like (LOC106452455), mRNA	29 kDa ribonucleoprotein, chloroplastic-like(LOC106452455)	coding protein	psRNATarget
XM_013822875.1	ncRNA:24   CAAAUAGGUUCCCAAAUCCCAAAA   1   ||**||||||||||||*||||||* targets:912   GUCGAUCCAAGGGUUUUGGGUUUG   935 Target Full Sequence	2.5	PREDICTED: Brassica napus 29 kDa ribonucleoprotein, chloroplastic-like (LOC106382808), mRNA	29 kDa ribonucleoprotein, chloroplastic-like(LOC106382808)	coding protein	psRNATarget
XM_013831341.1	ncRNA:24   CAAAUAG-GUUCCCAAAUCCCAAAA   1   |||*=||-=|||||||||||||||| targets:41   GUUCGUCGUAAGGGUUUAGGGUUUU   65 Target Full Sequence	3.0	PREDICTED: Brassica napus putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial (LOC106390802), mRNA	putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial(LOC106390802)	coding protein	psRNATarget
XM_013799963.1	ncRNA:24   CAAAUAGGUUCCCAAAUCCCAAAA   1   *|||=||*=||||||||||||||* targets:156   UUUUGUCAGAGGGUUUAGGGUUUA   179 Target Full Sequence	3.0	PREDICTED: Brassica napus protein CHLOROPLAST IMPORT APPARATUS 2-like (LOC106360374), mRNA	protein CHLOROPLAST IMPORT APPARATUS 2-like(LOC106360374)	coding protein	psRNATarget
XM_013849805.1	ncRNA:24   CAAAUAGGUUCCCAAAUCCCAAAA   1   *|||=||*=||||||||||||||* targets:137   UUUUGUCAGAGGGUUUAGGGUUUA   160 Target Full Sequence	3.0	PREDICTED: Brassica napus protein CHLOROPLAST IMPORT APPARATUS 2-like (LOC106409124), mRNA	protein CHLOROPLAST IMPORT APPARATUS 2-like(LOC106409124)	coding protein	psRNATarget
XM_013886074.1	ncRNA:24   CAAAUAGGUUCCCAAAUCCCAAAA   1   *|||=||*=||||||||||||||* targets:161   UUUUGUCAGAGGGUUUAGGGUUUA   184 Target Full Sequence	3.0	PREDICTED: Brassica napus protein CHLOROPLAST IMPORT APPARATUS 2 (LOC106444616), mRNA	protein CHLOROPLAST IMPORT APPARATUS 2(LOC106444616)	coding protein	psRNATarget
XM_013816119.1	ncRNA:24   CAAAUAGGUUCCCAAAUCCCAAAA   1   *|||=||*=||||||||||||||* targets:205   UUUUGUCAGAGGGUUUAGGGUUUA   228 Target Full Sequence	3.0	PREDICTED: Brassica napus protein CHLOROPLAST IMPORT APPARATUS 2-like (LOC106376068), mRNA	protein CHLOROPLAST IMPORT APPARATUS 2-like(LOC106376068)	coding protein	psRNATarget
XM_013895988.1	ncRNA:24   CAAAUAGGUUCCCAAAUCCCAAAA   1   ||*|*||=||*||||||||||||* targets:761   GUCUCUCUAAUGGUUUAGGGUUUG   784 Target Full Sequence	3.0	PREDICTED: Brassica napus ABC transporter B family member 5-like (LOC106453778), mRNA	ABC transporter B family member 5-like(LOC106453778)	coding protein	psRNATarget
XM_013868758.1	ncRNA:24   CAAAUAGGUUCCCAAAUCCCAAAA   1   ||*|*||=||*||||||||||||* targets:1220   GUCUCUCUAAUGGUUUAGGGUUUG   1243 Target Full Sequence	3.0	PREDICTED: Brassica napus ABC transporter B family member 5-like (LOC106428022), mRNA	ABC transporter B family member 5-like(LOC106428022)	coding protein	psRNATarget