Search result

BaseInfo

ncRNA ID novel_bna_miR210
Species Brassica napus
Class miRNA
Genome position ChrA5:34121835-34121977 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527233;SRR1363496
Length 21
Mature sequence(if miRNA) 1 - UAAGCUGCCAGCAUGAUCUUG - 21
Stem-loop(if miRNA) --U                  U    UC     -       ----       --UAUAACUA   U        A
   AAGCUGCCAGCAUGAUCU GUCU  CUCUC CUAAGCU    UCAUAUA          AGC AAGGAAAU A
   |||||||||||||||||| ||||  ||||| |||||||    |||||||          ||| |||||||| A
   UUCGAUGGUCGUACUGGA CAGA  GAGAG GAUUCGA    AGUAUAU          UUG UUCUUUUA U
CAC                  U    GA     A       UAAU       UAGAAUACUC   -        A
Stem-loop sequence UAAGCUGCCAGCAUGAUCUUGUCUUCCUCUCCUAAGCUUCAUAUAUAUAACUAAGCUAAGGAAAUAAAUAAUUUUCUUGUUCUCAUAAGAUUAUAUGAUAAUAGCUUAGAGAGAGAGAGACUAGGUCAUGCUGGUAGCUUCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013814912.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  *|||||*|||=||||||||||
targets:355   AAAGAUGAUGUUGGCAGCUUA   375

2.5 PREDICTED: Brassica napus uncharacterized LOC106375012 (LOC106375012), mRNA uncharacterized LOC106375012(BNAC03G69930D) coding protein psRNATarget
XM_013851272.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  ==||||||*|||||||||||=
targets:2917   UGAGAUCAGGCUGGCAGCUUG   2937

2.5 PREDICTED: Brassica napus auxin response factor 6 (LOC106410709), transcript variant X2, mRNA auxin response factor 6(LOC106410709) coding protein psRNATarget
XM_013851271.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  ==||||||*|||||||||||=
targets:2923   UGAGAUCAGGCUGGCAGCUUG   2943

2.5 PREDICTED: Brassica napus auxin response factor 6 (LOC106410709), transcript variant X1, mRNA auxin response factor 6(LOC106410709) coding protein psRNATarget
XM_013859140.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  ==||||||*|||||||||||=
targets:3075   UGAGAUCAGGCUGGCAGCUUG   3095

2.5 PREDICTED: Brassica napus auxin response factor 6-like (LOC106418427), transcript variant X3, mRNA auxin response factor 6-like(LOC106418427) coding protein psRNATarget
XM_013859138.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  ==||||||*|||||||||||=
targets:3081   UGAGAUCAGGCUGGCAGCUUG   3101

2.5 PREDICTED: Brassica napus auxin response factor 6-like (LOC106418427), transcript variant X1, mRNA auxin response factor 6-like(LOC106418427) coding protein psRNATarget
XM_013859139.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  ==||||||*|||||||||||=
targets:3081   UGAGAUCAGGCUGGCAGCUUG   3101

2.5 PREDICTED: Brassica napus auxin response factor 6-like (LOC106418427), transcript variant X2, mRNA auxin response factor 6-like(LOC106418427) coding protein psRNATarget
XM_013801357.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  ==||||||*|||||||||||=
targets:3173   UGAGAUCAGGCUGGCAGCUUG   3193

2.5 PREDICTED: Brassica napus auxin response factor 6-like (LOC106361581), mRNA auxin response factor 6-like(LOC106361581) coding protein psRNATarget
XM_013807020.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  ==||||||*|||||||||||=
targets:3244   UGAGAUCAGGCUGGCAGCUUG   3264

2.5 PREDICTED: Brassica napus auxin response factor 6-like (LOC106367280), transcript variant X2, mRNA auxin response factor 6-like(LOC106367280) coding protein psRNATarget
XM_013807019.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  ==||||||*|||||||||||=
targets:3249   UGAGAUCAGGCUGGCAGCUUG   3269

2.5 PREDICTED: Brassica napus auxin response factor 6-like (LOC106367280), transcript variant X1, mRNA auxin response factor 6-like(LOC106367280) coding protein psRNATarget
XM_013867000.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  =*||||||*|||||||||||=
targets:2522   UUAGAUCAGGCUGGCAGCUUG   2542

2.5 PREDICTED: Brassica napus auxin response factor 8-like (LOC106426279), mRNA auxin response factor 8-like(LOC106426279) coding protein psRNATarget
XM_013876468.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  =*||||||*|||||||||||=
targets:2855   UUAGAUCAGGCUGGCAGCUUG   2875

2.5 PREDICTED: Brassica napus auxin response factor 8-like (LOC106435561), transcript variant X2, mRNA auxin response factor 8-like(LOC106435561) coding protein psRNATarget
XM_013876467.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  =*||||||*|||||||||||=
targets:2927   UUAGAUCAGGCUGGCAGCUUG   2947

2.5 PREDICTED: Brassica napus auxin response factor 8-like (LOC106435561), transcript variant X1, mRNA auxin response factor 8-like(LOC106435561) coding protein psRNATarget
XM_013886509.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  =*||||||*|||||||||||=
targets:2913   UUAGAUCAGGCUGGCAGCUUG   2933

2.5 PREDICTED: Brassica napus auxin response factor 8 (LOC106445029), transcript variant X2, mRNA auxin response factor 8(LOC106445029) coding protein psRNATarget
XM_013886508.1
ncRNA:21   GUUCUAGUACGACCGUCGAAU   1
  =*||||||*|||||||||||=
targets:2991   UUAGAUCAGGCUGGCAGCUUG   3011

2.5 PREDICTED: Brassica napus auxin response factor 8 (LOC106445029), transcript variant X1, mRNA auxin response factor 8(LOC106445029) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.