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BaseInfo

ncRNA ID novel_bna_miR203
Species Brassica napus
Class miRNA
Genome position ChrA5:24527664-24527718 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527232;SRR527234
Length 24
Mature sequence(if miRNA) 32 - AGCCUGGCUCUGAUACCAUGAAGU - 55
Stem-loop(if miRNA) --UA          A     U      
    CAUGGUAUCA AGCCA GUUAUCA
    |||||||||| ||||| ||||||U
    GUACCAUAGU UCGGU CGAUAGU
UGAA          C     C      
Stem-loop sequence UACAUGGUAUCAAAGCCAUGUUAUCAUUGAUAGCCUGGCUCUGAUACCAUGAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013865539.1
ncRNA:24   UGAAGUACCAUAGUCUCGGUCCGA   1
  **|*=|||||||||||||||||=|
targets:90   UGUAUAUGGUAUCAGAGCCAGGUU   113

1.5 PREDICTED: Brassica napus uncharacterized LOC106424787 (LOC106424787), mRNA uncharacterized LOC106424787(LOC106424787) coding protein psRNATarget
XM_013838665.1
ncRNA:24   UGAAGUACCAUAGUCUCGGUCCGA   1
  **|*=|||||||||||||||||=|
targets:78   UGUAUAUGGUAUCAGAGCCAGGUU   101

1.5 PREDICTED: Brassica napus uncharacterized LOC106398065 (LOC106398065), mRNA uncharacterized LOC106398065(LOC106398065) coding protein psRNATarget
XM_013850044.1
ncRNA:24   UGAAGUACCAUAGUCUCGGUCCGA   1
  ==**=|||||||||||||||||=|
targets:2923   GUCAUAUGGUAUCAGAGCCAGGUU   2946

1.5 PREDICTED: Brassica napus uncharacterized LOC106409397 (LOC106409397), mRNA uncharacterized LOC106409397(LOC106409397) coding protein psRNATarget
XM_013817059.1
ncRNA:24   UGAA--GUACCAUAGUCUCGGUCCGA   1
  =|||--=|||||||||||||*||||*
targets:634   GCUUGUUAUGGUAUCAGAGCAAGGCA   659

2.5 PREDICTED: Brassica napus uncharacterized LOC106376928 (LOC106376928), mRNA uncharacterized LOC106376928(LOC106376928) coding protein psRNATarget