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BaseInfo

ncRNA ID ath-miR5649a
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:21360151-21360251 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 73 - AUUGAAUAUGUUGGUUACUAU - 93
Stem-loop(if miRNA) U                                           AAAAU
 UCAUAUUAUAGUAACCAACAUAUUCAAUACUUUCAAAUGAAGA     A
 |||||||||||||||||||||||||||||||||||||||||||     A
 AGUAUAAUAUCAUUGGUUGUAUAAGUUAUGAAAGUUUACUUCU     U
A                                           ACGGU
Stem-loop sequence UUCAUAUUAUAGUAACCAACAUAUUCAAUACUUUCAAAUGAAGAAAAAUAAUUGGCAUCUUCAUUUGAAAGUAUUGAAUAUGUUGGUUACUAUAAUAUGAA

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).